miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 9421 0.66 0.351516
Target:  5'- aUCGCGUAGuCGCCcaGCaCCgCGcUGAGCa -3'
miRNA:   3'- gAGCGCGUC-GCGG--CG-GGaGC-ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 48173 0.66 0.351516
Target:  5'- gUCGCGCAgGCGCagGCCCgcaagGuGCCc -3'
miRNA:   3'- gAGCGCGU-CGCGg-CGGGagca-CuCGG- -5'
12784 3' -62.3 NC_003387.1 + 47800 0.66 0.351516
Target:  5'- -aCGCGCGaCGCCGCgCCgggcaGUGcAGCUa -3'
miRNA:   3'- gaGCGCGUcGCGGCG-GGag---CAC-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 19861 0.66 0.351516
Target:  5'- -cCGaCGCGGCGCugggCGCCCUgcaagacacCGUGcugGGCCu -3'
miRNA:   3'- gaGC-GCGUCGCG----GCGGGA---------GCAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 29743 0.66 0.351516
Target:  5'- gUCGU-CGGCGCCGCCCgacaCGaUGA-CCg -3'
miRNA:   3'- gAGCGcGUCGCGGCGGGa---GC-ACUcGG- -5'
12784 3' -62.3 NC_003387.1 + 35542 0.66 0.346718
Target:  5'- uUCGCGCcGuCGCCGCCCaggcggcgcaccagcUCagcgcGGGCCg -3'
miRNA:   3'- gAGCGCGuC-GCGGCGGG---------------AGca---CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 38069 0.66 0.343545
Target:  5'- uUCGCGaucGCGauaaCGCCCUCGgccuuGCCc -3'
miRNA:   3'- gAGCGCgu-CGCg---GCGGGAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 32825 0.66 0.343545
Target:  5'- uCUCaGCGCAGC-CCGCaCCgCG-GGGCg -3'
miRNA:   3'- -GAG-CGCGUCGcGGCG-GGaGCaCUCGg -5'
12784 3' -62.3 NC_003387.1 + 27429 0.66 0.343545
Target:  5'- -cCGCGCcGaCGUCGCCCUgGcUGAcuGCCc -3'
miRNA:   3'- gaGCGCGuC-GCGGCGGGAgC-ACU--CGG- -5'
12784 3' -62.3 NC_003387.1 + 35797 0.66 0.343545
Target:  5'- -aCGuCGUAGCGgCGCCCcaugUUGUcGGCCg -3'
miRNA:   3'- gaGC-GCGUCGCgGCGGG----AGCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 37468 0.66 0.343545
Target:  5'- --gGCGCuGCGCCGCCaaaagGuGCCg -3'
miRNA:   3'- gagCGCGuCGCGGCGGgagcaCuCGG- -5'
12784 3' -62.3 NC_003387.1 + 3653 0.66 0.343545
Target:  5'- -gCGCGCcGCGagcCUGCCCg-GUGAGCg -3'
miRNA:   3'- gaGCGCGuCGC---GGCGGGagCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 19243 0.66 0.343545
Target:  5'- aUCGCG-GGCGCCGaccgCCUCGgcgacuucGGCCg -3'
miRNA:   3'- gAGCGCgUCGCGGCg---GGAGCac------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 10665 0.66 0.343545
Target:  5'- cCUCGaCGCGGCugcgaccacgGCCG-CCUCGgcgGuGGCCg -3'
miRNA:   3'- -GAGC-GCGUCG----------CGGCgGGAGCa--C-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 36019 0.66 0.335705
Target:  5'- gUCGUGguGCGCCGCaagCGgaucaaGAGCa -3'
miRNA:   3'- gAGCGCguCGCGGCGggaGCa-----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 17723 0.66 0.335705
Target:  5'- --gGCGguGCGCCccgGCCCggccGGGCCg -3'
miRNA:   3'- gagCGCguCGCGG---CGGGagcaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 13327 0.66 0.335705
Target:  5'- aCUCGCGCgccaGGCGCacgaGCaCCUCGUacaccucgGGGUUa -3'
miRNA:   3'- -GAGCGCG----UCGCGg---CG-GGAGCA--------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 22352 0.66 0.335705
Target:  5'- -aUGCGCAGCgaGCUGCaggcggucgaCUCGUGAaugugGCCg -3'
miRNA:   3'- gaGCGCGUCG--CGGCGg---------GAGCACU-----CGG- -5'
12784 3' -62.3 NC_003387.1 + 52257 0.66 0.335705
Target:  5'- gCUCGCGCcG-GUCGCCgUCGgccGCCg -3'
miRNA:   3'- -GAGCGCGuCgCGGCGGgAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 2422 0.66 0.335705
Target:  5'- aUCGCGUugacGGCccaGCCGUUCUCGacGGCCu -3'
miRNA:   3'- gAGCGCG----UCG---CGGCGGGAGCacUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.