miRNA display CGI


Results 21 - 40 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 9624 0.71 0.155052
Target:  5'- gUCGCGCucguacccGGCGCCcgucaCCCUgGUGuGCCa -3'
miRNA:   3'- gAGCGCG--------UCGCGGc----GGGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 10531 0.69 0.216819
Target:  5'- gCUCGCGCA-CGCC-CgCCUCGUuGAGgCg -3'
miRNA:   3'- -GAGCGCGUcGCGGcG-GGAGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 10665 0.66 0.343545
Target:  5'- cCUCGaCGCGGCugcgaccacgGCCG-CCUCGgcgGuGGCCg -3'
miRNA:   3'- -GAGC-GCGUCG----------CGGCgGGAGCa--C-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 11324 0.67 0.291431
Target:  5'- aCUCGUGCuGCGCCucggucGCCCggCGcucGGCCu -3'
miRNA:   3'- -GAGCGCGuCGCGG------CGGGa-GCac-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 11619 0.68 0.271064
Target:  5'- gUCGUGCAGCGCCaGCagCUCGc-GGCUc -3'
miRNA:   3'- gAGCGCGUCGCGG-CGg-GAGCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 11890 0.68 0.277723
Target:  5'- gUCGCGCacgaucGGCGCCG-UCUUGUGcccuuuGGCCu -3'
miRNA:   3'- gAGCGCG------UCGCGGCgGGAGCAC------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 12196 0.68 0.258133
Target:  5'- cCUCGgGCAG-GUCGCUgCUCGgugccGGGCCa -3'
miRNA:   3'- -GAGCgCGUCgCGGCGG-GAGCa----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 12333 0.7 0.206101
Target:  5'- -aCGUGCAGCucGCCGCCgaCGUcGAGgCCc -3'
miRNA:   3'- gaGCGCGUCG--CGGCGGgaGCA-CUC-GG- -5'
12784 3' -62.3 NC_003387.1 + 12411 0.69 0.24571
Target:  5'- aCUC-CGguGCGCCGCUgUgG-GAGCUg -3'
miRNA:   3'- -GAGcGCguCGCGGCGGgAgCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 13039 0.74 0.098403
Target:  5'- -aCGCGCuGCGUCGCCUUCGcgaucgcGAGCUg -3'
miRNA:   3'- gaGCGCGuCGCGGCGGGAGCa------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 13327 0.66 0.335705
Target:  5'- aCUCGCGCgccaGGCGCacgaGCaCCUCGUacaccucgGGGUUa -3'
miRNA:   3'- -GAGCGCG----UCGCGg---CG-GGAGCA--------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 14670 0.66 0.359617
Target:  5'- gCUCGCuCAGCcaCCGCCCgaUCG-GGGCg -3'
miRNA:   3'- -GAGCGcGUCGc-GGCGGG--AGCaCUCGg -5'
12784 3' -62.3 NC_003387.1 + 14822 0.7 0.186037
Target:  5'- -gCGgGCAGCggGUCGCCCUCG-GGGUUg -3'
miRNA:   3'- gaGCgCGUCG--CGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 14976 0.68 0.267131
Target:  5'- gUCGCcgaGCAGCuugccgucgaauguuGCCGCCCUCGgcuuGUCg -3'
miRNA:   3'- gAGCG---CGUCG---------------CGGCGGGAGCacu-CGG- -5'
12784 3' -62.3 NC_003387.1 + 15076 0.66 0.376208
Target:  5'- gUCGUGaCGGCGaCGCUgUUG-GAGCCc -3'
miRNA:   3'- gAGCGC-GUCGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 15268 0.68 0.249384
Target:  5'- --gGCGCAGCGCCGCCagcauggcaaccgUCGgcggcuugGGGCUc -3'
miRNA:   3'- gagCGCGUCGCGGCGGg------------AGCa-------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 15351 0.66 0.359617
Target:  5'- --aGCGgGGCGCCGCCgCcCGacagGuGCCg -3'
miRNA:   3'- gagCGCgUCGCGGCGG-GaGCa---CuCGG- -5'
12784 3' -62.3 NC_003387.1 + 16919 0.66 0.351516
Target:  5'- aUCGCGCcgacGGCGCCGaggcacagCUCG-GGGCUg -3'
miRNA:   3'- gAGCGCG----UCGCGGCgg------GAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 17029 0.76 0.070849
Target:  5'- -cCGCgGCGGCuGCCGCCCUCGccGGGCg -3'
miRNA:   3'- gaGCG-CGUCG-CGGCGGGAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 17491 0.66 0.359617
Target:  5'- aCUUGCG-GGCGCCGCggCCguaGUGcucGGCCa -3'
miRNA:   3'- -GAGCGCgUCGCGGCG--GGag-CAC---UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.