Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12784 | 3' | -62.3 | NC_003387.1 | + | 19399 | 0.66 | 0.359617 |
Target: 5'- gUUGUGCAGCGUCGUgcgggCCUUGaugccaaGGGCCu -3' miRNA: 3'- gAGCGCGUCGCGGCG-----GGAGCa------CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 27141 | 0.66 | 0.376208 |
Target: 5'- -cCGUGCccgccggggucGGCGCCGCCggggaaCGUGuGCCc -3' miRNA: 3'- gaGCGCG-----------UCGCGGCGGga----GCACuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 48704 | 0.66 | 0.376208 |
Target: 5'- cCUCGCGCuuGGCGuuGUCgagcacCGUGcGCCg -3' miRNA: 3'- -GAGCGCG--UCGCggCGGga----GCACuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 31019 | 0.66 | 0.376208 |
Target: 5'- gUCgGCGCGG-GCCGCgCUCGccGAGgCg -3' miRNA: 3'- gAG-CGCGUCgCGGCGgGAGCa-CUCgG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 2336 | 0.66 | 0.376208 |
Target: 5'- gCUCgGCGguGUcgagGCCGCCgUCGgcgucGAGCg -3' miRNA: 3'- -GAG-CGCguCG----CGGCGGgAGCa----CUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 25460 | 0.66 | 0.375366 |
Target: 5'- cCUCGCGCGaccaggcaugccGgGCCGCCUcgaccgcgCGUGucagcucGGCCg -3' miRNA: 3'- -GAGCGCGU------------CgCGGCGGGa-------GCAC-------UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 28529 | 0.66 | 0.375366 |
Target: 5'- -gUGCGCcgucauaGGUGCCGCUgUUuUGGGCCu -3' miRNA: 3'- gaGCGCG-------UCGCGGCGGgAGcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 39012 | 0.66 | 0.367848 |
Target: 5'- aUCGCcCuGCGCCGCC----UGGGCCg -3' miRNA: 3'- gAGCGcGuCGCGGCGGgagcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 52052 | 0.66 | 0.367848 |
Target: 5'- cCUCGCuaAGCGUCGCCgUCGaaugguucaucGGGCg -3' miRNA: 3'- -GAGCGcgUCGCGGCGGgAGCa----------CUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 2967 | 0.66 | 0.367848 |
Target: 5'- -aCGCGCAuGgGCCuCgCUCG-GGGCCu -3' miRNA: 3'- gaGCGCGU-CgCGGcGgGAGCaCUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 2239 | 0.66 | 0.367848 |
Target: 5'- --aGCGuCAGCcaguuGCCGacgaCCUCGcGGGCCg -3' miRNA: 3'- gagCGC-GUCG-----CGGCg---GGAGCaCUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 47796 | 0.66 | 0.376208 |
Target: 5'- gCUUGCGCGGguCGaCCuuGCCCUCGUacuugcguuuGAGCa -3' miRNA: 3'- -GAGCGCGUC--GC-GG--CGGGAGCA----------CUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 17491 | 0.66 | 0.359617 |
Target: 5'- aCUUGCG-GGCGCCGCggCCguaGUGcucGGCCa -3' miRNA: 3'- -GAGCGCgUCGCGGCG--GGag-CAC---UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 20792 | 0.66 | 0.359617 |
Target: 5'- --gGCGCGGauCUGCUCg-GUGAGCCa -3' miRNA: 3'- gagCGCGUCgcGGCGGGagCACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 15351 | 0.66 | 0.359617 |
Target: 5'- --aGCGgGGCGCCGCCgCcCGacagGuGCCg -3' miRNA: 3'- gagCGCgUCGCGGCGG-GaGCa---CuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 14670 | 0.66 | 0.359617 |
Target: 5'- gCUCGCuCAGCcaCCGCCCgaUCG-GGGCg -3' miRNA: 3'- -GAGCGcGUCGc-GGCGGG--AGCaCUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29790 | 0.66 | 0.357987 |
Target: 5'- gCUUGCGCguguauccGGCGCCGCUaauuucggucgCGUuGGCCg -3' miRNA: 3'- -GAGCGCG--------UCGCGGCGGga---------GCAcUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 16919 | 0.66 | 0.351516 |
Target: 5'- aUCGCGCcgacGGCGCCGaggcacagCUCG-GGGCUg -3' miRNA: 3'- gAGCGCG----UCGCGGCgg------GAGCaCUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 9421 | 0.66 | 0.351516 |
Target: 5'- aUCGCGUAGuCGCCcaGCaCCgCGcUGAGCa -3' miRNA: 3'- gAGCGCGUC-GCGG--CG-GGaGC-ACUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29743 | 0.66 | 0.351516 |
Target: 5'- gUCGU-CGGCGCCGCCCgacaCGaUGA-CCg -3' miRNA: 3'- gAGCGcGUCGCGGCGGGa---GC-ACUcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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