miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 141 0.7 0.186037
Target:  5'- cCUCGCGauccGCGCCGCCga-GcUGGGCCu -3'
miRNA:   3'- -GAGCGCgu--CGCGGCGGgagC-ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 694 0.68 0.251858
Target:  5'- gUCGCGCGccacgucauuGCGCCGCaaggcaUCGUGucgacGGCCu -3'
miRNA:   3'- gAGCGCGU----------CGCGGCGgg----AGCAC-----UCGG- -5'
12784 3' -62.3 NC_003387.1 + 1401 0.69 0.220682
Target:  5'- gUCGCGCucgaaguugugcgaGGCGCCGCCgC-CGacGAGCUg -3'
miRNA:   3'- gAGCGCG--------------UCGCGGCGG-GaGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 2239 0.66 0.367848
Target:  5'- --aGCGuCAGCcaguuGCCGacgaCCUCGcGGGCCg -3'
miRNA:   3'- gagCGC-GUCG-----CGGCg---GGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 2336 0.66 0.376208
Target:  5'- gCUCgGCGguGUcgagGCCGCCgUCGgcgucGAGCg -3'
miRNA:   3'- -GAG-CGCguCG----CGGCGGgAGCa----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 2422 0.66 0.335705
Target:  5'- aUCGCGUugacGGCccaGCCGUUCUCGacGGCCu -3'
miRNA:   3'- gAGCGCG----UCG---CGGCGGGAGCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 2967 0.66 0.367848
Target:  5'- -aCGCGCAuGgGCCuCgCUCG-GGGCCu -3'
miRNA:   3'- gaGCGCGU-CgCGGcGgGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 3048 0.68 0.251858
Target:  5'- --gGCGCAGgCGuucCCGCCCgccUCGgucGAGCCg -3'
miRNA:   3'- gagCGCGUC-GC---GGCGGG---AGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 3653 0.66 0.343545
Target:  5'- -gCGCGCcGCGagcCUGCCCg-GUGAGCg -3'
miRNA:   3'- gaGCGCGuCGC---GGCGGGagCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 4187 0.67 0.305662
Target:  5'- cCUCgGCGCGGUGCUucgGCCaccgCGUGucGGCCc -3'
miRNA:   3'- -GAG-CGCGUCGCGG---CGGga--GCAC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 4400 0.76 0.074862
Target:  5'- aCUCGCGCucgcGCGCCGCCUcgauuUCGUcGAGgCg -3'
miRNA:   3'- -GAGCGCGu---CGCGGCGGG-----AGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 4768 0.67 0.305662
Target:  5'- gCUCGCGguGCuucGCgGCCCacacggcgUCGUGcccauGCCu -3'
miRNA:   3'- -GAGCGCguCG---CGgCGGG--------AGCACu----CGG- -5'
12784 3' -62.3 NC_003387.1 + 6364 0.69 0.219019
Target:  5'- gUCGCGCuuggccucggccgcgGGCGaCGCCUUgCGUGGGCg -3'
miRNA:   3'- gAGCGCG---------------UCGCgGCGGGA-GCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 6763 0.68 0.284512
Target:  5'- --aGCGCA-CGCCucGCCCUUGcgcGGGCCg -3'
miRNA:   3'- gagCGCGUcGCGG--CGGGAGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 6879 0.72 0.147097
Target:  5'- gCUCGCGCAggaucuccGCGgCGUCgUCGcGGGCCa -3'
miRNA:   3'- -GAGCGCGU--------CGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 7011 0.69 0.219019
Target:  5'- gUCGCGCAGCagcucgGCCGCUUUCGcGuucaacggcaggcccGGCCg -3'
miRNA:   3'- gAGCGCGUCG------CGGCGGGAGCaC---------------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 8277 0.72 0.135861
Target:  5'- cCUCGCGCAGCGCCucguGCgCgUCGgcGGGCa -3'
miRNA:   3'- -GAGCGCGUCGCGG----CG-GgAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 8459 0.67 0.327997
Target:  5'- -cCGCGCGGCGCgGUgUUUGcUGcaGGCCa -3'
miRNA:   3'- gaGCGCGUCGCGgCGgGAGC-AC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 8974 0.73 0.112653
Target:  5'- -cUGCGCGGUGCCGCCaacacgCUCGcGGGCUc -3'
miRNA:   3'- gaGCGCGUCGCGGCGG------GAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 9421 0.66 0.351516
Target:  5'- aUCGCGUAGuCGCCcaGCaCCgCGcUGAGCa -3'
miRNA:   3'- gAGCGCGUC-GCGG--CG-GGaGC-ACUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.