miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 28902 0.67 0.5023
Target:  5'- cGGcgcgGCGCCCucacguaucugcuGCGCGGCG-GCGAGg-- -3'
miRNA:   3'- -CCa---UGCGGG-------------CGUGUCGCcCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 17725 0.66 0.544692
Target:  5'- cGGUGCGCCCcgGCcCGGCcGGGCcgccaGGGg-- -3'
miRNA:   3'- -CCAUGCGGG--CGuGUCG-CCCG-----CUCaac -5'
12785 3' -58.5 NC_003387.1 + 30709 0.68 0.42421
Target:  5'- cGUGCGCCUGCGgggcgcuCAGcCGGGCaGGUg- -3'
miRNA:   3'- cCAUGCGGGCGU-------GUC-GCCCGcUCAac -5'
12785 3' -58.5 NC_003387.1 + 45983 0.68 0.415882
Target:  5'- uGUGgGCCUGUAUgucgAGCGGGgCGAGUc- -3'
miRNA:   3'- cCAUgCGGGCGUG----UCGCCC-GCUCAac -5'
12785 3' -58.5 NC_003387.1 + 8771 0.67 0.483143
Target:  5'- cGGgccuuCGCCgUGCgGCGGCGGGCGAccUGa -3'
miRNA:   3'- -CCau---GCGG-GCG-UGUCGCCCGCUcaAC- -5'
12785 3' -58.5 NC_003387.1 + 47469 1.1 0.000436
Target:  5'- aGGUACGCCCGCACAGCGGGCGAGUUGu -3'
miRNA:   3'- -CCAUGCGGGCGUGUCGCCCGCUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 7963 0.73 0.200138
Target:  5'- cGGgcCGCUU-CACGGCGGGCGGGUg- -3'
miRNA:   3'- -CCauGCGGGcGUGUCGCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 33281 0.67 0.492175
Target:  5'- --cGCGCCCGCACGGCcuuaacgcccuguGGGaCGGuGUa- -3'
miRNA:   3'- ccaUGCGGGCGUGUCG-------------CCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 38556 0.67 0.483143
Target:  5'- --cACGCCCGCGgccCGGCccGGCGAGg-- -3'
miRNA:   3'- ccaUGCGGGCGU---GUCGc-CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 4258 0.67 0.473203
Target:  5'- --aACGUCUGCgACAGCGGGuCGAcGUa- -3'
miRNA:   3'- ccaUGCGGGCG-UGUCGCCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 23326 0.67 0.463367
Target:  5'- -cUGCGCCCG----GCGGGCGAGa-- -3'
miRNA:   3'- ccAUGCGGGCguguCGCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 19939 0.67 0.453639
Target:  5'- aGGU-CGaCCCGgcgguaCGCGGCGGGUG-GUUGc -3'
miRNA:   3'- -CCAuGC-GGGC------GUGUCGCCCGCuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 44295 0.68 0.434523
Target:  5'- gGGUGugcucgaguuuuUGCCgGCgguuagcuACGGCGGGCGGGcUUGa -3'
miRNA:   3'- -CCAU------------GCGGgCG--------UGUCGCCCGCUC-AAC- -5'
12785 3' -58.5 NC_003387.1 + 3332 0.68 0.415882
Target:  5'- ---cCGCCUGCGCAGCGuGCGcAGUg- -3'
miRNA:   3'- ccauGCGGGCGUGUCGCcCGC-UCAac -5'
12785 3' -58.5 NC_003387.1 + 8273 0.68 0.40584
Target:  5'- --aGCGCCuCGCGCAGCGccucgugcgcgucGGCGGGc-- -3'
miRNA:   3'- ccaUGCGG-GCGUGUCGC-------------CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 20505 0.71 0.271931
Target:  5'- --cGCGCUCGCGCAGCGcGGCGu---- -3'
miRNA:   3'- ccaUGCGGGCGUGUCGC-CCGCucaac -5'
12785 3' -58.5 NC_003387.1 + 14808 0.71 0.258666
Target:  5'- cGGUGCcgaGCCaCGCggGCAGCGGGUcgcccucgGGGUUGa -3'
miRNA:   3'- -CCAUG---CGG-GCG--UGUCGCCCG--------CUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 1274 0.72 0.251598
Target:  5'- cGGUGCGgCUGCGCGGCGuucgaccGGCGcAGUUc -3'
miRNA:   3'- -CCAUGCgGGCGUGUCGC-------CCGC-UCAAc -5'
12785 3' -58.5 NC_003387.1 + 20197 0.72 0.245935
Target:  5'- -cUGCGCCuCGCACGGCcGGGCGuGc-- -3'
miRNA:   3'- ccAUGCGG-GCGUGUCG-CCCGCuCaac -5'
12785 3' -58.5 NC_003387.1 + 28077 0.73 0.205429
Target:  5'- --gGCGaCCuCGCGCAGCaGGGCGAGg-- -3'
miRNA:   3'- ccaUGC-GG-GCGUGUCG-CCCGCUCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.