miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 49492 0.69 0.380111
Target:  5'- cGGUGCGCCCGCcCGGCGu-CGAcGUg- -3'
miRNA:   3'- -CCAUGCGGGCGuGUCGCccGCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 8273 0.68 0.40584
Target:  5'- --aGCGCCuCGCGCAGCGccucgugcgcgucGGCGGGc-- -3'
miRNA:   3'- ccaUGCGG-GCGUGUCGC-------------CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 3332 0.68 0.415882
Target:  5'- ---cCGCCUGCGCAGCGuGCGcAGUg- -3'
miRNA:   3'- ccauGCGGGCGUGUCGCcCGC-UCAac -5'
12785 3' -58.5 NC_003387.1 + 45983 0.68 0.415882
Target:  5'- uGUGgGCCUGUAUgucgAGCGGGgCGAGUc- -3'
miRNA:   3'- cCAUgCGGGCGUG----UCGCCC-GCUCAac -5'
12785 3' -58.5 NC_003387.1 + 30709 0.68 0.42421
Target:  5'- cGUGCGCCUGCGgggcgcuCAGcCGGGCaGGUg- -3'
miRNA:   3'- cCAUGCGGGCGU-------GUC-GCCCGcUCAac -5'
12785 3' -58.5 NC_003387.1 + 1288 0.68 0.425142
Target:  5'- cGGUgauGCGCCuCGaCGCccuGGCGGGCGAcGUc- -3'
miRNA:   3'- -CCA---UGCGG-GC-GUG---UCGCCCGCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 45954 0.68 0.425142
Target:  5'- --gACgGCCCGCGCAa-GGGCGAGg-- -3'
miRNA:   3'- ccaUG-CGGGCGUGUcgCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 44295 0.68 0.434523
Target:  5'- gGGUGugcucgaguuuuUGCCgGCgguuagcuACGGCGGGCGGGcUUGa -3'
miRNA:   3'- -CCAU------------GCGGgCG--------UGUCGCCCGCUC-AAC- -5'
12785 3' -58.5 NC_003387.1 + 34501 0.67 0.453639
Target:  5'- aGUACGCCCGcCGCuGCGGcgccGCGAu--- -3'
miRNA:   3'- cCAUGCGGGC-GUGuCGCC----CGCUcaac -5'
12785 3' -58.5 NC_003387.1 + 19939 0.67 0.453639
Target:  5'- aGGU-CGaCCCGgcgguaCGCGGCGGGUG-GUUGc -3'
miRNA:   3'- -CCAuGC-GGGC------GUGUCGCCCGCuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 23326 0.67 0.463367
Target:  5'- -cUGCGCCCG----GCGGGCGAGa-- -3'
miRNA:   3'- ccAUGCGGGCguguCGCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 43708 0.67 0.473203
Target:  5'- --gGCGCCCGCcaggugcucgACGGCGGcauGCGGGa-- -3'
miRNA:   3'- ccaUGCGGGCG----------UGUCGCC---CGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 4258 0.67 0.473203
Target:  5'- --aACGUCUGCgACAGCGGGuCGAcGUa- -3'
miRNA:   3'- ccaUGCGGGCG-UGUCGCCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 4559 0.67 0.473203
Target:  5'- -cUGCGCCUGCGCGaccgcGCGGGCcucGGUg- -3'
miRNA:   3'- ccAUGCGGGCGUGU-----CGCCCGc--UCAac -5'
12785 3' -58.5 NC_003387.1 + 8771 0.67 0.483143
Target:  5'- cGGgccuuCGCCgUGCgGCGGCGGGCGAccUGa -3'
miRNA:   3'- -CCau---GCGG-GCG-UGUCGCCCGCUcaAC- -5'
12785 3' -58.5 NC_003387.1 + 38556 0.67 0.483143
Target:  5'- --cACGCCCGCGgccCGGCccGGCGAGg-- -3'
miRNA:   3'- ccaUGCGGGCGU---GUCGc-CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 35627 0.67 0.483143
Target:  5'- aGGa--GCCCGCcgagGCGGcCGGGCGGGc-- -3'
miRNA:   3'- -CCaugCGGGCG----UGUC-GCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 6943 0.67 0.483143
Target:  5'- --cGCgGCCUGCGCAGCG-GCGGGc-- -3'
miRNA:   3'- ccaUG-CGGGCGUGUCGCcCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 33281 0.67 0.492175
Target:  5'- --cGCGCCCGCACGGCcuuaacgcccuguGGGaCGGuGUa- -3'
miRNA:   3'- ccaUGCGGGCGUGUCG-------------CCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 29716 0.67 0.493183
Target:  5'- cGGcgGCGCCCaggccgacgacgGCAgCuacGCGGGCGAGcUGg -3'
miRNA:   3'- -CCa-UGCGGG------------CGU-Gu--CGCCCGCUCaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.