miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 20197 0.72 0.245935
Target:  5'- -cUGCGCCuCGCACGGCcGGGCGuGc-- -3'
miRNA:   3'- ccAUGCGG-GCGUGUCG-CCCGCuCaac -5'
12785 3' -58.5 NC_003387.1 + 20505 0.71 0.271931
Target:  5'- --cGCGCUCGCGCAGCGcGGCGu---- -3'
miRNA:   3'- ccaUGCGGGCGUGUCGC-CCGCucaac -5'
12785 3' -58.5 NC_003387.1 + 21471 0.67 0.503317
Target:  5'- uGGcGCaGCCCGCGcCGGuCGGGcCGGGcUGg -3'
miRNA:   3'- -CCaUG-CGGGCGU-GUC-GCCC-GCUCaAC- -5'
12785 3' -58.5 NC_003387.1 + 23326 0.67 0.463367
Target:  5'- -cUGCGCCCG----GCGGGCGAGa-- -3'
miRNA:   3'- ccAUGCGGGCguguCGCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 28077 0.73 0.205429
Target:  5'- --gGCGaCCuCGCGCAGCaGGGCGAGg-- -3'
miRNA:   3'- ccaUGC-GG-GCGUGUCG-CCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 28902 0.67 0.5023
Target:  5'- cGGcgcgGCGCCCucacguaucugcuGCGCGGCG-GCGAGg-- -3'
miRNA:   3'- -CCa---UGCGGG-------------CGUGUCGCcCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 29716 0.67 0.493183
Target:  5'- cGGcgGCGCCCaggccgacgacgGCAgCuacGCGGGCGAGcUGg -3'
miRNA:   3'- -CCa-UGCGGG------------CGU-Gu--CGCCCGCUCaAC- -5'
12785 3' -58.5 NC_003387.1 + 30573 0.71 0.271931
Target:  5'- cGGUACGCgCCGUGCcGCGaGuGCGGGUa- -3'
miRNA:   3'- -CCAUGCG-GGCGUGuCGC-C-CGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 30709 0.68 0.42421
Target:  5'- cGUGCGCCUGCGgggcgcuCAGcCGGGCaGGUg- -3'
miRNA:   3'- cCAUGCGGGCGU-------GUC-GCCCGcUCAac -5'
12785 3' -58.5 NC_003387.1 + 31265 0.66 0.523848
Target:  5'- gGGcUGCGCCaGCGgGGcCGGGUuAGUUGa -3'
miRNA:   3'- -CC-AUGCGGgCGUgUC-GCCCGcUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 32831 0.71 0.278766
Target:  5'- --cGCaGCCCGCACcGCgGGGCGGGgcGg -3'
miRNA:   3'- ccaUG-CGGGCGUGuCG-CCCGCUCaaC- -5'
12785 3' -58.5 NC_003387.1 + 33281 0.67 0.492175
Target:  5'- --cGCGCCCGCACGGCcuuaacgcccuguGGGaCGGuGUa- -3'
miRNA:   3'- ccaUGCGGGCGUGUCG-------------CCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 34501 0.67 0.453639
Target:  5'- aGUACGCCCGcCGCuGCGGcgccGCGAu--- -3'
miRNA:   3'- cCAUGCGGGC-GUGuCGCC----CGCUcaac -5'
12785 3' -58.5 NC_003387.1 + 35627 0.67 0.483143
Target:  5'- aGGa--GCCCGCcgagGCGGcCGGGCGGGc-- -3'
miRNA:   3'- -CCaugCGGGCG----UGUC-GCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 37143 0.69 0.380111
Target:  5'- uGGUugGgcaCUCGCugGGCGGGCGcauGGUc- -3'
miRNA:   3'- -CCAugC---GGGCGugUCGCCCGC---UCAac -5'
12785 3' -58.5 NC_003387.1 + 38556 0.67 0.483143
Target:  5'- --cACGCCCGCGgccCGGCccGGCGAGg-- -3'
miRNA:   3'- ccaUGCGGGCGU---GUCGc-CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 39400 0.71 0.271931
Target:  5'- cGUGCGCCuggCGCGCgAGUGGGuCGAGgUGa -3'
miRNA:   3'- cCAUGCGG---GCGUG-UCGCCC-GCUCaAC- -5'
12785 3' -58.5 NC_003387.1 + 39448 0.66 0.544692
Target:  5'- cGGUaucGCGaaCCUGUACgAGCGGGCGcGGUg- -3'
miRNA:   3'- -CCA---UGC--GGGCGUG-UCGCCCGC-UCAac -5'
12785 3' -58.5 NC_003387.1 + 43708 0.67 0.473203
Target:  5'- --gGCGCCCGCcaggugcucgACGGCGGcauGCGGGa-- -3'
miRNA:   3'- ccaUGCGGGCG----------UGUCGCC---CGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 44295 0.68 0.434523
Target:  5'- gGGUGugcucgaguuuuUGCCgGCgguuagcuACGGCGGGCGGGcUUGa -3'
miRNA:   3'- -CCAU------------GCGGgCG--------UGUCGCCCGCUC-AAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.