miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 504 0.66 0.555215
Target:  5'- --cGCGCCCGCGUGGCGaccGCG-GUUGa -3'
miRNA:   3'- ccaUGCGGGCGUGUCGCc--CGCuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 947 0.69 0.354668
Target:  5'- --gACGCCCaGCcacCAGuCGGGCGGGUa- -3'
miRNA:   3'- ccaUGCGGG-CGu--GUC-GCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 1274 0.72 0.251598
Target:  5'- cGGUGCGgCUGCGCGGCGuucgaccGGCGcAGUUc -3'
miRNA:   3'- -CCAUGCgGGCGUGUCGC-------CCGC-UCAAc -5'
12785 3' -58.5 NC_003387.1 + 1288 0.68 0.425142
Target:  5'- cGGUgauGCGCCuCGaCGCccuGGCGGGCGAcGUc- -3'
miRNA:   3'- -CCA---UGCGG-GC-GUG---UCGCCCGCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 3143 0.66 0.544692
Target:  5'- aGGccacCGCCCG-GCAGCGGGCGc---- -3'
miRNA:   3'- -CCau--GCGGGCgUGUCGCCCGCucaac -5'
12785 3' -58.5 NC_003387.1 + 3332 0.68 0.415882
Target:  5'- ---cCGCCUGCGCAGCGuGCGcAGUg- -3'
miRNA:   3'- ccauGCGGGCGUGUCGCcCGC-UCAac -5'
12785 3' -58.5 NC_003387.1 + 3644 0.66 0.534234
Target:  5'- cGUACGCCUGCGCGccGCGagccugcccGGUGAGc-- -3'
miRNA:   3'- cCAUGCGGGCGUGU--CGC---------CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 4258 0.67 0.473203
Target:  5'- --aACGUCUGCgACAGCGGGuCGAcGUa- -3'
miRNA:   3'- ccaUGCGGGCG-UGUCGCCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 4559 0.67 0.473203
Target:  5'- -cUGCGCCUGCGCGaccgcGCGGGCcucGGUg- -3'
miRNA:   3'- ccAUGCGGGCGUGU-----CGCCCGc--UCAac -5'
12785 3' -58.5 NC_003387.1 + 5298 0.7 0.314994
Target:  5'- --cACGCCCaacCugGGCGGGUGAGcgUGg -3'
miRNA:   3'- ccaUGCGGGc--GugUCGCCCGCUCa-AC- -5'
12785 3' -58.5 NC_003387.1 + 5523 0.73 0.194965
Target:  5'- cGGcuCGCCCGCG-AGCGGGCGaAGUUc -3'
miRNA:   3'- -CCauGCGGGCGUgUCGCCCGC-UCAAc -5'
12785 3' -58.5 NC_003387.1 + 6943 0.67 0.483143
Target:  5'- --cGCgGCCUGCGCAGCG-GCGGGc-- -3'
miRNA:   3'- ccaUG-CGGGCGUGUCGCcCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 7963 0.73 0.200138
Target:  5'- cGGgcCGCUU-CACGGCGGGCGGGUg- -3'
miRNA:   3'- -CCauGCGGGcGUGUCGCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 8273 0.68 0.40584
Target:  5'- --aGCGCCuCGCGCAGCGccucgugcgcgucGGCGGGc-- -3'
miRNA:   3'- ccaUGCGG-GCGUGUCGC-------------CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 8771 0.67 0.483143
Target:  5'- cGGgccuuCGCCgUGCgGCGGCGGGCGAccUGa -3'
miRNA:   3'- -CCau---GCGG-GCG-UGUCGCCCGCUcaAC- -5'
12785 3' -58.5 NC_003387.1 + 10697 0.66 0.544692
Target:  5'- cGGUGgcCGCCgGUAUcaAGcCGGGCGAGc-- -3'
miRNA:   3'- -CCAU--GCGGgCGUG--UC-GCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 14516 0.7 0.30009
Target:  5'- aGGUGCGCCUGCgugcgguacucgGCGGCcGGGCc-GUUGc -3'
miRNA:   3'- -CCAUGCGGGCG------------UGUCG-CCCGcuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 14808 0.71 0.258666
Target:  5'- cGGUGCcgaGCCaCGCggGCAGCGGGUcgcccucgGGGUUGa -3'
miRNA:   3'- -CCAUG---CGG-GCG--UGUCGCCCG--------CUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 17725 0.66 0.544692
Target:  5'- cGGUGCGCCCcgGCcCGGCcGGGCcgccaGGGg-- -3'
miRNA:   3'- -CCAUGCGGG--CGuGUCG-CCCG-----CUCaac -5'
12785 3' -58.5 NC_003387.1 + 19939 0.67 0.453639
Target:  5'- aGGU-CGaCCCGgcgguaCGCGGCGGGUG-GUUGc -3'
miRNA:   3'- -CCAuGC-GGGC------GUGUCGCCCGCuCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.