miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 47469 1.1 0.000436
Target:  5'- aGGUACGCCCGCACAGCGGGCGAGUUGu -3'
miRNA:   3'- -CCAUGCGGGCGUGUCGCCCGCUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 49576 0.74 0.175432
Target:  5'- aGGUGCGCCCGCu--GcCGGGCG-GUg- -3'
miRNA:   3'- -CCAUGCGGGCGuguC-GCCCGCuCAac -5'
12785 3' -58.5 NC_003387.1 + 5523 0.73 0.194965
Target:  5'- cGGcuCGCCCGCG-AGCGGGCGaAGUUc -3'
miRNA:   3'- -CCauGCGGGCGUgUCGCCCGC-UCAAc -5'
12785 3' -58.5 NC_003387.1 + 7963 0.73 0.200138
Target:  5'- cGGgcCGCUU-CACGGCGGGCGGGUg- -3'
miRNA:   3'- -CCauGCGGGcGUGUCGCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 28077 0.73 0.205429
Target:  5'- --gGCGaCCuCGCGCAGCaGGGCGAGg-- -3'
miRNA:   3'- ccaUGC-GG-GCGUGUCG-CCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 20197 0.72 0.245935
Target:  5'- -cUGCGCCuCGCACGGCcGGGCGuGc-- -3'
miRNA:   3'- ccAUGCGG-GCGUGUCG-CCCGCuCaac -5'
12785 3' -58.5 NC_003387.1 + 1274 0.72 0.251598
Target:  5'- cGGUGCGgCUGCGCGGCGuucgaccGGCGcAGUUc -3'
miRNA:   3'- -CCAUGCgGGCGUGUCGC-------CCGC-UCAAc -5'
12785 3' -58.5 NC_003387.1 + 14808 0.71 0.258666
Target:  5'- cGGUGCcgaGCCaCGCggGCAGCGGGUcgcccucgGGGUUGa -3'
miRNA:   3'- -CCAUG---CGG-GCG--UGUCGCCCG--------CUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 39400 0.71 0.271931
Target:  5'- cGUGCGCCuggCGCGCgAGUGGGuCGAGgUGa -3'
miRNA:   3'- cCAUGCGG---GCGUG-UCGCCC-GCUCaAC- -5'
12785 3' -58.5 NC_003387.1 + 20505 0.71 0.271931
Target:  5'- --cGCGCUCGCGCAGCGcGGCGu---- -3'
miRNA:   3'- ccaUGCGGGCGUGUCGC-CCGCucaac -5'
12785 3' -58.5 NC_003387.1 + 30573 0.71 0.271931
Target:  5'- cGGUACGCgCCGUGCcGCGaGuGCGGGUa- -3'
miRNA:   3'- -CCAUGCG-GGCGUGuCGC-C-CGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 32831 0.71 0.278766
Target:  5'- --cGCaGCCCGCACcGCgGGGCGGGgcGg -3'
miRNA:   3'- ccaUG-CGGGCGUGuCG-CCCGCUCaaC- -5'
12785 3' -58.5 NC_003387.1 + 46713 0.71 0.278766
Target:  5'- uGG-ACGCCaaGCA-GGCGGGCGAGUg- -3'
miRNA:   3'- -CCaUGCGGg-CGUgUCGCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 14516 0.7 0.30009
Target:  5'- aGGUGCGCCUGCgugcgguacucgGCGGCcGGGCc-GUUGc -3'
miRNA:   3'- -CCAUGCGGGCG------------UGUCG-CCCGcuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 5298 0.7 0.314994
Target:  5'- --cACGCCCaacCugGGCGGGUGAGcgUGg -3'
miRNA:   3'- ccaUGCGGGc--GugUCGCCCGCUCa-AC- -5'
12785 3' -58.5 NC_003387.1 + 47202 0.7 0.330451
Target:  5'- ---uCGCCCGCuc-GCGGGCGAGc-- -3'
miRNA:   3'- ccauGCGGGCGuguCGCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 947 0.69 0.354668
Target:  5'- --gACGCCCaGCcacCAGuCGGGCGGGUa- -3'
miRNA:   3'- ccaUGCGGG-CGu--GUC-GCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 45874 0.69 0.371496
Target:  5'- cGGcUGCGCgCCGCGgccgAGCGGGCGAu--- -3'
miRNA:   3'- -CC-AUGCG-GGCGUg---UCGCCCGCUcaac -5'
12785 3' -58.5 NC_003387.1 + 44475 0.69 0.371496
Target:  5'- uGGUugGcCCCGCACAGCaGcGCGuGc-- -3'
miRNA:   3'- -CCAugC-GGGCGUGUCGcC-CGCuCaac -5'
12785 3' -58.5 NC_003387.1 + 37143 0.69 0.380111
Target:  5'- uGGUugGgcaCUCGCugGGCGGGCGcauGGUc- -3'
miRNA:   3'- -CCAugC---GGGCGugUCGCCCGC---UCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.