miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 34501 0.67 0.453639
Target:  5'- aGUACGCCCGcCGCuGCGGcgccGCGAu--- -3'
miRNA:   3'- cCAUGCGGGC-GUGuCGCC----CGCUcaac -5'
12785 3' -58.5 NC_003387.1 + 19939 0.67 0.453639
Target:  5'- aGGU-CGaCCCGgcgguaCGCGGCGGGUG-GUUGc -3'
miRNA:   3'- -CCAuGC-GGGC------GUGUCGCCCGCuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 44295 0.68 0.434523
Target:  5'- gGGUGugcucgaguuuuUGCCgGCgguuagcuACGGCGGGCGGGcUUGa -3'
miRNA:   3'- -CCAU------------GCGGgCG--------UGUCGCCCGCUC-AAC- -5'
12785 3' -58.5 NC_003387.1 + 45954 0.68 0.425142
Target:  5'- --gACgGCCCGCGCAa-GGGCGAGg-- -3'
miRNA:   3'- ccaUG-CGGGCGUGUcgCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 1288 0.68 0.425142
Target:  5'- cGGUgauGCGCCuCGaCGCccuGGCGGGCGAcGUc- -3'
miRNA:   3'- -CCA---UGCGG-GC-GUG---UCGCCCGCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 30709 0.68 0.42421
Target:  5'- cGUGCGCCUGCGgggcgcuCAGcCGGGCaGGUg- -3'
miRNA:   3'- cCAUGCGGGCGU-------GUC-GCCCGcUCAac -5'
12785 3' -58.5 NC_003387.1 + 45983 0.68 0.415882
Target:  5'- uGUGgGCCUGUAUgucgAGCGGGgCGAGUc- -3'
miRNA:   3'- cCAUgCGGGCGUG----UCGCCC-GCUCAac -5'
12785 3' -58.5 NC_003387.1 + 3332 0.68 0.415882
Target:  5'- ---cCGCCUGCGCAGCGuGCGcAGUg- -3'
miRNA:   3'- ccauGCGGGCGUGUCGCcCGC-UCAac -5'
12785 3' -58.5 NC_003387.1 + 8273 0.68 0.40584
Target:  5'- --aGCGCCuCGCGCAGCGccucgugcgcgucGGCGGGc-- -3'
miRNA:   3'- ccaUGCGG-GCGUGUCGC-------------CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 49492 0.69 0.380111
Target:  5'- cGGUGCGCCCGCcCGGCGu-CGAcGUg- -3'
miRNA:   3'- -CCAUGCGGGCGuGUCGCccGCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 37143 0.69 0.380111
Target:  5'- uGGUugGgcaCUCGCugGGCGGGCGcauGGUc- -3'
miRNA:   3'- -CCAugC---GGGCGugUCGCCCGC---UCAac -5'
12785 3' -58.5 NC_003387.1 + 44475 0.69 0.371496
Target:  5'- uGGUugGcCCCGCACAGCaGcGCGuGc-- -3'
miRNA:   3'- -CCAugC-GGGCGUGUCGcC-CGCuCaac -5'
12785 3' -58.5 NC_003387.1 + 45874 0.69 0.371496
Target:  5'- cGGcUGCGCgCCGCGgccgAGCGGGCGAu--- -3'
miRNA:   3'- -CC-AUGCG-GGCGUg---UCGCCCGCUcaac -5'
12785 3' -58.5 NC_003387.1 + 947 0.69 0.354668
Target:  5'- --gACGCCCaGCcacCAGuCGGGCGGGUa- -3'
miRNA:   3'- ccaUGCGGG-CGu--GUC-GCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 47202 0.7 0.330451
Target:  5'- ---uCGCCCGCuc-GCGGGCGAGc-- -3'
miRNA:   3'- ccauGCGGGCGuguCGCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 5298 0.7 0.314994
Target:  5'- --cACGCCCaacCugGGCGGGUGAGcgUGg -3'
miRNA:   3'- ccaUGCGGGc--GugUCGCCCGCUCa-AC- -5'
12785 3' -58.5 NC_003387.1 + 14516 0.7 0.30009
Target:  5'- aGGUGCGCCUGCgugcgguacucgGCGGCcGGGCc-GUUGc -3'
miRNA:   3'- -CCAUGCGGGCG------------UGUCG-CCCGcuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 32831 0.71 0.278766
Target:  5'- --cGCaGCCCGCACcGCgGGGCGGGgcGg -3'
miRNA:   3'- ccaUG-CGGGCGUGuCG-CCCGCUCaaC- -5'
12785 3' -58.5 NC_003387.1 + 46713 0.71 0.278766
Target:  5'- uGG-ACGCCaaGCA-GGCGGGCGAGUg- -3'
miRNA:   3'- -CCaUGCGGg-CGUgUCGCCCGCUCAac -5'
12785 3' -58.5 NC_003387.1 + 30573 0.71 0.271931
Target:  5'- cGGUACGCgCCGUGCcGCGaGuGCGGGUa- -3'
miRNA:   3'- -CCAUGCG-GGCGUGuCGC-C-CGCUCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.