Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12790 | 5' | -59.6 | NC_003387.1 | + | 22974 | 0.67 | 0.412268 |
Target: 5'- cCGG-UCAUCGUGUCG-GGcgGCgCCGa -3' miRNA: 3'- cGCCgAGUAGCGCAGCgCCuaCG-GGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 23398 | 0.69 | 0.336176 |
Target: 5'- gGCGGCUUucagCGCGgccuggCGCucGUGCCCGc -3' miRNA: 3'- -CGCCGAGua--GCGCa-----GCGccUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 23679 | 0.68 | 0.391829 |
Target: 5'- cGCGGCUCAagGCGgC-CGGAUacaacgcgagcaacGCCCa -3' miRNA: 3'- -CGCCGAGUagCGCaGcGCCUA--------------CGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 24708 | 0.68 | 0.377151 |
Target: 5'- uCGGCUUGcCGCGcUCGUcGGUGCCCu -3' miRNA: 3'- cGCCGAGUaGCGC-AGCGcCUACGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 27790 | 0.67 | 0.449336 |
Target: 5'- gGCGGCcccgcCGUCG-GUCGCGGcgGUCa- -3' miRNA: 3'- -CGCCGa----GUAGCgCAGCGCCuaCGGgc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 28435 | 0.71 | 0.247732 |
Target: 5'- gGCGGCUCAUgGUGUaCacgaucgacgagcugGCGGcgGCCCc -3' miRNA: 3'- -CGCCGAGUAgCGCA-G---------------CGCCuaCGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 28891 | 0.7 | 0.270853 |
Target: 5'- gGCGGCUUAggCGCGggCGcCGGGccaccGCCCGa -3' miRNA: 3'- -CGCCGAGUa-GCGCa-GC-GCCUa----CGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 30858 | 0.67 | 0.430568 |
Target: 5'- aGCaGCUCGUgCGCGUCGgCaccuGGUGCgCCGg -3' miRNA: 3'- -CGcCGAGUA-GCGCAGC-Gc---CUACG-GGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 32853 | 0.69 | 0.336176 |
Target: 5'- gGCGGUUC--CGCGUCGCcGAcUGCgCCGa -3' miRNA: 3'- -CGCCGAGuaGCGCAGCGcCU-ACG-GGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 33768 | 0.66 | 0.498125 |
Target: 5'- gGCGGCgc--CGCGa-GCGGuuugGCCCGg -3' miRNA: 3'- -CGCCGaguaGCGCagCGCCua--CGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 34118 | 0.73 | 0.190024 |
Target: 5'- uCGGCggCGUCGaCGUCGCGG-UGCgCGa -3' miRNA: 3'- cGCCGa-GUAGC-GCAGCGCCuACGgGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 34284 | 0.66 | 0.518301 |
Target: 5'- aCGGUgCG-CGCGUacaCGUGGcUGCCCGa -3' miRNA: 3'- cGCCGaGUaGCGCA---GCGCCuACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 36620 | 0.66 | 0.478309 |
Target: 5'- cGCGGCUgcUgGcCGcCGC-GAUGCCCGa -3' miRNA: 3'- -CGCCGAguAgC-GCaGCGcCUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 36993 | 0.66 | 0.508171 |
Target: 5'- uGCGGCUgAUC-CGgCGCGGGU-UCCGc -3' miRNA: 3'- -CGCCGAgUAGcGCaGCGCCUAcGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 38062 | 0.66 | 0.507163 |
Target: 5'- gGUGGCUgAgcgagcgcCGCGUcacugugCGCGGcgGCCUGa -3' miRNA: 3'- -CGCCGAgUa-------GCGCA-------GCGCCuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 38849 | 0.74 | 0.159826 |
Target: 5'- cCGGCggCAUUGCGUUGCGGAUcuucaaacagugugaGCCCc -3' miRNA: 3'- cGCCGa-GUAGCGCAGCGCCUA---------------CGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 39252 | 0.72 | 0.216138 |
Target: 5'- gGUGGUgcccUCcUCGcCGUCGCGGcccuUGCCCGa -3' miRNA: 3'- -CGCCG----AGuAGC-GCAGCGCCu---ACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 40350 | 0.66 | 0.518301 |
Target: 5'- aGCGGCagAUUGCGggccgUCGCGGcgGCg-- -3' miRNA: 3'- -CGCCGagUAGCGC-----AGCGCCuaCGggc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 41104 | 0.73 | 0.195015 |
Target: 5'- cGCGGCg-GUCGCGgccuUCGU-GAUGCCCGa -3' miRNA: 3'- -CGCCGagUAGCGC----AGCGcCUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 42062 | 0.77 | 0.101613 |
Target: 5'- cGCGGCguguacgaccuggCG-CGCGUgcUGCGGGUGCCCGg -3' miRNA: 3'- -CGCCGa------------GUaGCGCA--GCGCCUACGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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