miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 34118 0.73 0.190024
Target:  5'- uCGGCggCGUCGaCGUCGCGG-UGCgCGa -3'
miRNA:   3'- cGCCGa-GUAGC-GCAGCGCCuACGgGC- -5'
12790 5' -59.6 NC_003387.1 + 207 0.73 0.171169
Target:  5'- gGCGGCUUGUCGCucuuGUCGCGGuUGCaCUu -3'
miRNA:   3'- -CGCCGAGUAGCG----CAGCGCCuACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 44022 0.76 0.120965
Target:  5'- aGCGGCUCGUCGaCGUCggucggcaGCGGcGUGCCg- -3'
miRNA:   3'- -CGCCGAGUAGC-GCAG--------CGCC-UACGGgc -5'
12790 5' -59.6 NC_003387.1 + 46132 0.66 0.518301
Target:  5'- cGCGGaaCAccggguugccguUCGCGUCGCGaAUGUUCGc -3'
miRNA:   3'- -CGCCgaGU------------AGCGCAGCGCcUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 11639 0.72 0.198577
Target:  5'- cGCGGCUCAcgaucgccccucgaUCGCGUCGaCaGcgGCCuCGg -3'
miRNA:   3'- -CGCCGAGU--------------AGCGCAGC-GcCuaCGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 42705 0.72 0.200121
Target:  5'- uCGGCUCGUCGuCGUCGUc---GCCCGg -3'
miRNA:   3'- cGCCGAGUAGC-GCAGCGccuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 43372 0.72 0.200121
Target:  5'- cCGGCUCGUCGaCGUC-CuGGUGCUCGa -3'
miRNA:   3'- cGCCGAGUAGC-GCAGcGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 50187 0.66 0.518301
Target:  5'- cGCGGCgac-CGCGU-GCGGAacaccgGCCCc -3'
miRNA:   3'- -CGCCGaguaGCGCAgCGCCUa-----CGGGc -5'
12790 5' -59.6 NC_003387.1 + 40350 0.66 0.518301
Target:  5'- aGCGGCagAUUGCGggccgUCGCGGcgGCg-- -3'
miRNA:   3'- -CGCCGagUAGCGC-----AGCGCCuaCGggc -5'
12790 5' -59.6 NC_003387.1 + 15101 0.66 0.497126
Target:  5'- gGCGGCgauuaccUCGgcagUGCGgUGCGGGUGCaCCa -3'
miRNA:   3'- -CGCCG-------AGUa---GCGCaGCGCCUACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 20097 0.66 0.48817
Target:  5'- -aGGCUCAUagggucaGCGccccCGCGGcgaGCCCGa -3'
miRNA:   3'- cgCCGAGUAg------CGCa---GCGCCua-CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 27790 0.67 0.449336
Target:  5'- gGCGGCcccgcCGUCG-GUCGCGGcgGUCa- -3'
miRNA:   3'- -CGCCGa----GUAGCgCAGCGCCuaCGGgc -5'
12790 5' -59.6 NC_003387.1 + 15684 0.67 0.449336
Target:  5'- -aGGC-CGUCaGUGUCGCc-GUGCCCGg -3'
miRNA:   3'- cgCCGaGUAG-CGCAGCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 9610 0.67 0.449336
Target:  5'- cGCGGCgCcgCGcCGUCGCGcucguacccGgcGCCCGu -3'
miRNA:   3'- -CGCCGaGuaGC-GCAGCGC---------CuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 17467 0.67 0.430568
Target:  5'- cGCGGCgccaguugUCGUCgGCGUacuUGCGGgcGCCgCGg -3'
miRNA:   3'- -CGCCG--------AGUAG-CGCA---GCGCCuaCGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 47123 0.68 0.360364
Target:  5'- uGCaGCUCGcucuuuUCGcCGUCGCGGAUcuuugccaGCUCGg -3'
miRNA:   3'- -CGcCGAGU------AGC-GCAGCGCCUA--------CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 23398 0.69 0.336176
Target:  5'- gGCGGCUUucagCGCGgccuggCGCucGUGCCCGc -3'
miRNA:   3'- -CGCCGAGua--GCGCa-----GCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 28891 0.7 0.270853
Target:  5'- gGCGGCUUAggCGCGggCGcCGGGccaccGCCCGa -3'
miRNA:   3'- -CGCCGAGUa-GCGCa-GC-GCCUa----CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 39252 0.72 0.216138
Target:  5'- gGUGGUgcccUCcUCGcCGUCGCGGcccuUGCCCGa -3'
miRNA:   3'- -CGCCG----AGuAGC-GCAGCGCCu---ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 8843 0.72 0.205342
Target:  5'- aGCGGCUCAcCGUG-CGCGaugGCCCa -3'
miRNA:   3'- -CGCCGAGUaGCGCaGCGCcuaCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.