miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 3' -52.8 NC_003387.1 + 49641 0.66 0.832901
Target:  5'- gUCGGC--GAGCUugGCcCCGAGUgGGUCg -3'
miRNA:   3'- -AGUCGaaCUUGA--CGcGGCUCAgCUAG- -5'
12791 3' -52.8 NC_003387.1 + 31301 0.66 0.8329
Target:  5'- gUAGCU---GCUGCGCCGGGcCGc-- -3'
miRNA:   3'- aGUCGAacuUGACGCGGCUCaGCuag -5'
12791 3' -52.8 NC_003387.1 + 48408 0.66 0.823601
Target:  5'- cUCGGCgUUGAGCcacUGCCGGGUCGc-- -3'
miRNA:   3'- -AGUCG-AACUUGac-GCGGCUCAGCuag -5'
12791 3' -52.8 NC_003387.1 + 27919 0.66 0.823601
Target:  5'- -gAGCU---GCUGCGCCaGGUCGGc- -3'
miRNA:   3'- agUCGAacuUGACGCGGcUCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 29659 0.66 0.823601
Target:  5'- cCGGCUgcucGAACgccuCGCCGAcGUCGAcgUCg -3'
miRNA:   3'- aGUCGAa---CUUGac--GCGGCU-CAGCU--AG- -5'
12791 3' -52.8 NC_003387.1 + 41967 0.66 0.814089
Target:  5'- cCAGCgagGAGCUGCGCgCgGAGgccgccgCGGUg -3'
miRNA:   3'- aGUCGaa-CUUGACGCG-G-CUCa------GCUAg -5'
12791 3' -52.8 NC_003387.1 + 42756 0.66 0.804375
Target:  5'- aUCGGCUgcgcuGgUGCcCCGAGUCGggCa -3'
miRNA:   3'- -AGUCGAacu--UgACGcGGCUCAGCuaG- -5'
12791 3' -52.8 NC_003387.1 + 27547 0.66 0.79447
Target:  5'- gCGGCgccgGGGCcaccGCGCCGAGcCGAa- -3'
miRNA:   3'- aGUCGaa--CUUGa---CGCGGCUCaGCUag -5'
12791 3' -52.8 NC_003387.1 + 34252 0.66 0.79447
Target:  5'- --cGCUcGAccgGCUGauCGCCGAGUCGggCg -3'
miRNA:   3'- aguCGAaCU---UGAC--GCGGCUCAGCuaG- -5'
12791 3' -52.8 NC_003387.1 + 39224 0.67 0.774136
Target:  5'- gCAGUggGAGCggguaccgGCGCCGGG-CGAg- -3'
miRNA:   3'- aGUCGaaCUUGa-------CGCGGCUCaGCUag -5'
12791 3' -52.8 NC_003387.1 + 6133 0.67 0.773102
Target:  5'- gCGGCUUGAGg-GCGCCacugugaGGGUCGGc- -3'
miRNA:   3'- aGUCGAACUUgaCGCGG-------CUCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 50954 0.67 0.762682
Target:  5'- uUCAGCUcGGGCgccaGCGCCGccGccgggcucaugcuGUCGAUCa -3'
miRNA:   3'- -AGUCGAaCUUGa---CGCGGC--U-------------CAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 40308 0.67 0.753183
Target:  5'- aUCAGCUcccacAGCgGCGCaccgGAGUUGAUCg -3'
miRNA:   3'- -AGUCGAac---UUGaCGCGg---CUCAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 33956 0.67 0.746791
Target:  5'- gCAGCUugccggggucggguaUGAGCUGcCGCagCGGGUCGcgGUCg -3'
miRNA:   3'- aGUCGA---------------ACUUGAC-GCG--GCUCAGC--UAG- -5'
12791 3' -52.8 NC_003387.1 + 4751 0.67 0.742506
Target:  5'- aCGGC---AAgaGUGUCGAGUCGAUCc -3'
miRNA:   3'- aGUCGaacUUgaCGCGGCUCAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 3946 0.67 0.73171
Target:  5'- aUCAGCggcGAgcugGCUGCGCCGAGcacCGcgUg -3'
miRNA:   3'- -AGUCGaa-CU----UGACGCGGCUCa--GCuaG- -5'
12791 3' -52.8 NC_003387.1 + 45381 0.68 0.709815
Target:  5'- cCGGCgguuAGCUGCGCCcggccgcccGAGcCGAUCg -3'
miRNA:   3'- aGUCGaac-UUGACGCGG---------CUCaGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 48946 0.68 0.709815
Target:  5'- cUCAGCUUcGAggcGCUGCGU-GAGcuggCGAUCg -3'
miRNA:   3'- -AGUCGAA-CU---UGACGCGgCUCa---GCUAG- -5'
12791 3' -52.8 NC_003387.1 + 46924 0.68 0.709815
Target:  5'- gCAcGCUUGAGCcggGCaCCGAgguGUCGAUCc -3'
miRNA:   3'- aGU-CGAACUUGa--CGcGGCU---CAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 13883 0.68 0.709815
Target:  5'- uUCAuGcCUUGAGCUGCGgCGGcucGUCGAg- -3'
miRNA:   3'- -AGU-C-GAACUUGACGCgGCU---CAGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.