miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12792 5' -57.7 NC_003387.1 + 15952 0.66 0.555936
Target:  5'- gGcCAGCGCcgaguGcCGUCGCUGACGgUGAc- -3'
miRNA:   3'- aC-GUCGCG-----CaGCGGCGACUGC-ACUuu -5'
12792 5' -57.7 NC_003387.1 + 47929 0.66 0.555936
Target:  5'- uUGUGGC-CGUCGCCGCgggccugcGACaUGAAGu -3'
miRNA:   3'- -ACGUCGcGCAGCGGCGa-------CUGcACUUU- -5'
12792 5' -57.7 NC_003387.1 + 44965 0.66 0.554856
Target:  5'- cGCGGCucaggccGCGaUCGCCGCUGcCGccGAGg -3'
miRNA:   3'- aCGUCG-------CGC-AGCGGCGACuGCa-CUUu -5'
12792 5' -57.7 NC_003387.1 + 39631 0.66 0.549464
Target:  5'- gGCGGCaugagccucgacccgGUGUCG-CGCaUGGCGUGGGAg -3'
miRNA:   3'- aCGUCG---------------CGCAGCgGCG-ACUGCACUUU- -5'
12792 5' -57.7 NC_003387.1 + 41104 0.66 0.534457
Target:  5'- cGCGGCG-GUCGCgGCcuuCGUGAu- -3'
miRNA:   3'- aCGUCGCgCAGCGgCGacuGCACUuu -5'
12792 5' -57.7 NC_003387.1 + 26882 0.66 0.534457
Target:  5'- aGCAucGCGCGUgGCCGUcauuccUGGCGUa--- -3'
miRNA:   3'- aCGU--CGCGCAgCGGCG------ACUGCAcuuu -5'
12792 5' -57.7 NC_003387.1 + 41138 0.66 0.523827
Target:  5'- gGCAGCGCGcCgacgGCCGCUGcgaGUGu-- -3'
miRNA:   3'- aCGUCGCGCaG----CGGCGACug-CACuuu -5'
12792 5' -57.7 NC_003387.1 + 39698 0.66 0.506992
Target:  5'- cGCAGCGCGugcagcagcggcagaUCggGCUGCUGACGa---- -3'
miRNA:   3'- aCGUCGCGC---------------AG--CGGCGACUGCacuuu -5'
12792 5' -57.7 NC_003387.1 + 12335 0.66 0.502819
Target:  5'- gUGCAGC---UCGCCGCcGACGUcGAGg -3'
miRNA:   3'- -ACGUCGcgcAGCGGCGaCUGCA-CUUu -5'
12792 5' -57.7 NC_003387.1 + 5715 0.67 0.492452
Target:  5'- gUGCc-CGCGUCGUCGCUGACc----- -3'
miRNA:   3'- -ACGucGCGCAGCGGCGACUGcacuuu -5'
12792 5' -57.7 NC_003387.1 + 7375 0.67 0.482186
Target:  5'- --gAGCGCGUCGCCugaGCUGcACG-GAu- -3'
miRNA:   3'- acgUCGCGCAGCGG---CGAC-UGCaCUuu -5'
12792 5' -57.7 NC_003387.1 + 633 0.67 0.472024
Target:  5'- gGCAGCGuCGcCGCCGCggcagcGACGcccgaUGAAc -3'
miRNA:   3'- aCGUCGC-GCaGCGGCGa-----CUGC-----ACUUu -5'
12792 5' -57.7 NC_003387.1 + 28372 0.67 0.442212
Target:  5'- cGCAGgGCGggcgcaacUCGUgGCUGACGcagGAAAc -3'
miRNA:   3'- aCGUCgCGC--------AGCGgCGACUGCa--CUUU- -5'
12792 5' -57.7 NC_003387.1 + 20513 0.68 0.432513
Target:  5'- cGCAGCGCGgcgucgcgcUCGUCGgUGACGa---- -3'
miRNA:   3'- aCGUCGCGC---------AGCGGCgACUGCacuuu -5'
12792 5' -57.7 NC_003387.1 + 32861 0.68 0.413494
Target:  5'- uUGCAGgGCGcccagCGCCGCgucGGCGUcgucGAGAg -3'
miRNA:   3'- -ACGUCgCGCa----GCGGCGa--CUGCA----CUUU- -5'
12792 5' -57.7 NC_003387.1 + 33985 0.68 0.40418
Target:  5'- cGCAGCGgGUCGCgGUcGACGa---- -3'
miRNA:   3'- aCGUCGCgCAGCGgCGaCUGCacuuu -5'
12792 5' -57.7 NC_003387.1 + 18319 0.68 0.394999
Target:  5'- gGCgAGUGCGUCGUCGCUGGuCGc---- -3'
miRNA:   3'- aCG-UCGCGCAGCGGCGACU-GCacuuu -5'
12792 5' -57.7 NC_003387.1 + 12816 0.69 0.377047
Target:  5'- cGCAGU-CGUCGCCggggcaGUUGugGUGAGg -3'
miRNA:   3'- aCGUCGcGCAGCGG------CGACugCACUUu -5'
12792 5' -57.7 NC_003387.1 + 30964 0.69 0.36828
Target:  5'- -aCAGCGCGUCGguggCGCUGACGccGAGc -3'
miRNA:   3'- acGUCGCGCAGCg---GCGACUGCa-CUUu -5'
12792 5' -57.7 NC_003387.1 + 49604 0.69 0.359653
Target:  5'- gGCAGUGC--UGCCGCUGGCGg---- -3'
miRNA:   3'- aCGUCGCGcaGCGGCGACUGCacuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.