miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 3' -54.5 NC_003387.1 + 41680 1.08 0.001303
Target:  5'- gCCGAACCGCGACAUAGCGGCCUUCAUg -3'
miRNA:   3'- -GGCUUGGCGCUGUAUCGCCGGAAGUA- -5'
12793 3' -54.5 NC_003387.1 + 11823 0.81 0.114058
Target:  5'- cCCGAGCCGCGAUc--GCGGCCUUgAUu -3'
miRNA:   3'- -GGCUUGGCGCUGuauCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 48796 0.74 0.301855
Target:  5'- gCUGAucGCCGCGGC--GGCGGCCaUCGUc -3'
miRNA:   3'- -GGCU--UGGCGCUGuaUCGCCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 7807 0.73 0.325252
Target:  5'- gCCGAGCUGCaACGccUGGCGGCCgaggUCGc -3'
miRNA:   3'- -GGCUUGGCGcUGU--AUCGCCGGa---AGUa -5'
12793 3' -54.5 NC_003387.1 + 42817 0.72 0.373337
Target:  5'- gCCGAGCCccgacggcggcgagGCGAuCAUGGCGGCgaUCGa -3'
miRNA:   3'- -GGCUUGG--------------CGCU-GUAUCGCCGgaAGUa -5'
12793 3' -54.5 NC_003387.1 + 51061 0.72 0.403299
Target:  5'- aCCGGcccacACCuccuCGACGUGGCGGCCgUCGUc -3'
miRNA:   3'- -GGCU-----UGGc---GCUGUAUCGCCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 18519 0.71 0.422184
Target:  5'- aCCG-ACCGCGACGUGGCgcuguGGCUUgugCGc -3'
miRNA:   3'- -GGCuUGGCGCUGUAUCG-----CCGGAa--GUa -5'
12793 3' -54.5 NC_003387.1 + 49800 0.71 0.44159
Target:  5'- gCCGAACCGCGACAcgaucAGCcGGUCgaagUUCAc -3'
miRNA:   3'- -GGCUUGGCGCUGUa----UCG-CCGG----AAGUa -5'
12793 3' -54.5 NC_003387.1 + 41090 0.71 0.44159
Target:  5'- uUGAAUagccacugCGCGGCGgucGCGGCCUUCGUg -3'
miRNA:   3'- gGCUUG--------GCGCUGUau-CGCCGGAAGUA- -5'
12793 3' -54.5 NC_003387.1 + 40937 0.7 0.481857
Target:  5'- aCGAACaCGUG-CAcAGCGGCCUUgAUg -3'
miRNA:   3'- gGCUUG-GCGCuGUaUCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 21655 0.7 0.492201
Target:  5'- gUCG-ACCGCGGC--GGCGGCCgagCAc -3'
miRNA:   3'- -GGCuUGGCGCUGuaUCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 8189 0.7 0.492201
Target:  5'- uUCGAGCCcuGCGGCGccgGGCGGCCcggCAc -3'
miRNA:   3'- -GGCUUGG--CGCUGUa--UCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 22447 0.7 0.492201
Target:  5'- gCGGGCCGCGGCGU--UGGCCUcgCGg -3'
miRNA:   3'- gGCUUGGCGCUGUAucGCCGGAa-GUa -5'
12793 3' -54.5 NC_003387.1 + 40873 0.7 0.492201
Target:  5'- cCCccGCCGCGAuCAUgucccaGGCGGCCUUgAUg -3'
miRNA:   3'- -GGcuUGGCGCU-GUA------UCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 36266 0.7 0.492201
Target:  5'- gCCGGGCUGUGGauUAUGGCGGCCc---- -3'
miRNA:   3'- -GGCUUGGCGCU--GUAUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 26440 0.7 0.502647
Target:  5'- gCCGAGCauuGCGACGUuGCGGUCgagCAc -3'
miRNA:   3'- -GGCUUGg--CGCUGUAuCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 22693 0.69 0.534534
Target:  5'- gUCG-ACgGCGGCGcUGGCGGCCUgggCGa -3'
miRNA:   3'- -GGCuUGgCGCUGU-AUCGCCGGAa--GUa -5'
12793 3' -54.5 NC_003387.1 + 1686 0.69 0.578081
Target:  5'- aCCGAcACCGCGGC--GGCGGUCg---- -3'
miRNA:   3'- -GGCU-UGGCGCUGuaUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 18299 0.69 0.582484
Target:  5'- gCCGAcccgGCCGCGGCGgUGGCgcccggcaacggcguGGCCgUCGUg -3'
miRNA:   3'- -GGCU----UGGCGCUGU-AUCG---------------CCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 34466 0.68 0.589101
Target:  5'- gUGGAUCGuCGACAUGGCGGCg----- -3'
miRNA:   3'- gGCUUGGC-GCUGUAUCGCCGgaagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.