miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 3' -54.5 NC_003387.1 + 198 0.66 0.753227
Target:  5'- cUCGGcCCGCGACAUuGCcGCgUUCGUc -3'
miRNA:   3'- -GGCUuGGCGCUGUAuCGcCGgAAGUA- -5'
12793 3' -54.5 NC_003387.1 + 820 0.67 0.688796
Target:  5'- gCGAAgCGCGACGacggccugUAcGCGGCCgaCAUg -3'
miRNA:   3'- gGCUUgGCGCUGU--------AU-CGCCGGaaGUA- -5'
12793 3' -54.5 NC_003387.1 + 1686 0.69 0.578081
Target:  5'- aCCGAcACCGCGGC--GGCGGUCg---- -3'
miRNA:   3'- -GGCU-UGGCGCUGuaUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 1937 0.66 0.732127
Target:  5'- cCCGAuCCGCGACGcaGGCGGUUg---- -3'
miRNA:   3'- -GGCUuGGCGCUGUa-UCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 4033 0.68 0.644573
Target:  5'- -aGAACCGCG---UGGCGGCCUc--- -3'
miRNA:   3'- ggCUUGGCGCuguAUCGCCGGAagua -5'
12793 3' -54.5 NC_003387.1 + 4472 0.66 0.721418
Target:  5'- cCCGAGCUGCuGGCc--GCGGCCg---- -3'
miRNA:   3'- -GGCUUGGCG-CUGuauCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 5237 0.66 0.753227
Target:  5'- gUGAACCGCGACcc-GCuGGCCgaCGg -3'
miRNA:   3'- gGCUUGGCGCUGuauCG-CCGGaaGUa -5'
12793 3' -54.5 NC_003387.1 + 6791 0.66 0.732127
Target:  5'- gCCGAG-CGCGACAUGGUcGCCcugCGg -3'
miRNA:   3'- -GGCUUgGCGCUGUAUCGcCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 7771 0.68 0.644573
Target:  5'- cCUGAGCCGCGGCcu-Ga-GCCUUCGc -3'
miRNA:   3'- -GGCUUGGCGCUGuauCgcCGGAAGUa -5'
12793 3' -54.5 NC_003387.1 + 7807 0.73 0.325252
Target:  5'- gCCGAGCUGCaACGccUGGCGGCCgaggUCGc -3'
miRNA:   3'- -GGCUUGGCGcUGU--AUCGCCGGa---AGUa -5'
12793 3' -54.5 NC_003387.1 + 8189 0.7 0.492201
Target:  5'- uUCGAGCCcuGCGGCGccgGGCGGCCcggCAc -3'
miRNA:   3'- -GGCUUGG--CGCUGUa--UCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 11823 0.81 0.114058
Target:  5'- cCCGAGCCGCGAUc--GCGGCCUUgAUu -3'
miRNA:   3'- -GGCUUGGCGCUGuauCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 12271 0.67 0.699741
Target:  5'- cCCGcGCCugGCGACc-GGCGGCCggaUCAg -3'
miRNA:   3'- -GGCuUGG--CGCUGuaUCGCCGGa--AGUa -5'
12793 3' -54.5 NC_003387.1 + 13983 0.66 0.742734
Target:  5'- cUCGAACCGCaugcccuuCGcccUGGCGGCCUUg-- -3'
miRNA:   3'- -GGCUUGGCGcu------GU---AUCGCCGGAAgua -5'
12793 3' -54.5 NC_003387.1 + 14673 0.67 0.655673
Target:  5'- gCGAACCGCGGCAcgugggagUcGUGGCCg---- -3'
miRNA:   3'- gGCUUGGCGCUGU--------AuCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 16758 0.67 0.688796
Target:  5'- gCCGAggGCCuccuCGACc--GCGGCCUUCGc -3'
miRNA:   3'- -GGCU--UGGc---GCUGuauCGCCGGAAGUa -5'
12793 3' -54.5 NC_003387.1 + 18299 0.69 0.582484
Target:  5'- gCCGAcccgGCCGCGGCGgUGGCgcccggcaacggcguGGCCgUCGUg -3'
miRNA:   3'- -GGCU----UGGCGCUGU-AUCG---------------CCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 18519 0.71 0.422184
Target:  5'- aCCG-ACCGCGACGUGGCgcuguGGCUUgugCGc -3'
miRNA:   3'- -GGCuUGGCGCUGUAUCG-----CCGGAa--GUa -5'
12793 3' -54.5 NC_003387.1 + 21655 0.7 0.492201
Target:  5'- gUCG-ACCGCGGC--GGCGGCCgagCAc -3'
miRNA:   3'- -GGCuUGGCGCUGuaUCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 22170 0.67 0.666751
Target:  5'- aCCG-GCCGCGGC--GGCGGUCcaugUCGg -3'
miRNA:   3'- -GGCuUGGCGCUGuaUCGCCGGa---AGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.