miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 3' -54.5 NC_003387.1 + 48796 0.74 0.301855
Target:  5'- gCUGAucGCCGCGGC--GGCGGCCaUCGUc -3'
miRNA:   3'- -GGCU--UGGCGCUGuaUCGCCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 39028 0.66 0.710619
Target:  5'- aCGAaacACCGUGG--UGGCGGCCggUCGa -3'
miRNA:   3'- gGCU---UGGCGCUguAUCGCCGGa-AGUa -5'
12793 3' -54.5 NC_003387.1 + 38838 0.66 0.721418
Target:  5'- gUCGAACCugcccgGCGGCAUugcguuGCGGaUCUUCAa -3'
miRNA:   3'- -GGCUUGG------CGCUGUAu-----CGCC-GGAAGUa -5'
12793 3' -54.5 NC_003387.1 + 45718 0.66 0.763594
Target:  5'- gCCGAGCugcugCGCGACAUucuGCGGCg----- -3'
miRNA:   3'- -GGCUUG-----GCGCUGUAu--CGCCGgaagua -5'
12793 3' -54.5 NC_003387.1 + 21655 0.7 0.492201
Target:  5'- gUCG-ACCGCGGC--GGCGGCCgagCAc -3'
miRNA:   3'- -GGCuUGGCGCUGuaUCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 36266 0.7 0.492201
Target:  5'- gCCGGGCUGUGGauUAUGGCGGCCc---- -3'
miRNA:   3'- -GGCUUGGCGCU--GUAUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 18299 0.69 0.582484
Target:  5'- gCCGAcccgGCCGCGGCGgUGGCgcccggcaacggcguGGCCgUCGUg -3'
miRNA:   3'- -GGCU----UGGCGCUGU-AUCG---------------CCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 34466 0.68 0.589101
Target:  5'- gUGGAUCGuCGACAUGGCGGCg----- -3'
miRNA:   3'- gGCUUGGC-GCUGUAUCGCCGgaagua -5'
12793 3' -54.5 NC_003387.1 + 45879 0.67 0.655673
Target:  5'- gCGcGCCGCGGCcgAGCgGGCgaUCGa -3'
miRNA:   3'- gGCuUGGCGCUGuaUCG-CCGgaAGUa -5'
12793 3' -54.5 NC_003387.1 + 12271 0.67 0.699741
Target:  5'- cCCGcGCCugGCGACc-GGCGGCCggaUCAg -3'
miRNA:   3'- -GGCuUGG--CGCUGuaUCGCCGGa--AGUa -5'
12793 3' -54.5 NC_003387.1 + 35204 0.67 0.666751
Target:  5'- gCCGAGCCGCugcGCAUGcUGGCCgagCAc -3'
miRNA:   3'- -GGCUUGGCGc--UGUAUcGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 41786 0.67 0.655673
Target:  5'- gCCGGgcgcguGCCGCGACcUGGCGcacGCCUggCAg -3'
miRNA:   3'- -GGCU------UGGCGCUGuAUCGC---CGGAa-GUa -5'
12793 3' -54.5 NC_003387.1 + 7807 0.73 0.325252
Target:  5'- gCCGAGCUGCaACGccUGGCGGCCgaggUCGc -3'
miRNA:   3'- -GGCUUGGCGcUGU--AUCGCCGGa---AGUa -5'
12793 3' -54.5 NC_003387.1 + 52515 0.67 0.666751
Target:  5'- aCCGcGACaagaGCGACAagccgccgagcUGGCGGCCgggcgUCAc -3'
miRNA:   3'- -GGC-UUGg---CGCUGU-----------AUCGCCGGa----AGUa -5'
12793 3' -54.5 NC_003387.1 + 42817 0.72 0.373337
Target:  5'- gCCGAGCCccgacggcggcgagGCGAuCAUGGCGGCgaUCGa -3'
miRNA:   3'- -GGCUUGG--------------CGCU-GUAUCGCCGgaAGUa -5'
12793 3' -54.5 NC_003387.1 + 46949 0.68 0.633461
Target:  5'- gUCGAuCCGCGGCGagcGCGGCCg---- -3'
miRNA:   3'- -GGCUuGGCGCUGUau-CGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 820 0.67 0.688796
Target:  5'- gCGAAgCGCGACGacggccugUAcGCGGCCgaCAUg -3'
miRNA:   3'- gGCUUgGCGCUGU--------AU-CGCCGGaaGUA- -5'
12793 3' -54.5 NC_003387.1 + 41217 0.66 0.718187
Target:  5'- cCCGAAuaagcacggcaacuCCGCGguGCAUGGCGGCgacaaggUCGUg -3'
miRNA:   3'- -GGCUU--------------GGCGC--UGUAUCGCCGga-----AGUA- -5'
12793 3' -54.5 NC_003387.1 + 18519 0.71 0.422184
Target:  5'- aCCG-ACCGCGACGUGGCgcuguGGCUUgugCGc -3'
miRNA:   3'- -GGCuUGGCGCUGUAUCG-----CCGGAa--GUa -5'
12793 3' -54.5 NC_003387.1 + 1686 0.69 0.578081
Target:  5'- aCCGAcACCGCGGC--GGCGGUCg---- -3'
miRNA:   3'- -GGCU-UGGCGCUGuaUCGCCGGaagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.