miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 5' -52.1 NC_003387.1 + 52027 0.66 0.840102
Target:  5'- aCGACGAGGCgaucaagGCCcUgCGUACCCUg- -3'
miRNA:   3'- -GUUGCUUUGa------CGGcGgGUAUGGGAaa -5'
12793 5' -52.1 NC_003387.1 + 32505 0.66 0.830841
Target:  5'- -uGCGAcGACUGCCGCUgCGUgcacGCCCg-- -3'
miRNA:   3'- guUGCU-UUGACGGCGG-GUA----UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 48087 0.66 0.830841
Target:  5'- uCGACGGGuggcGCUGCCGCUgc-GCCCg-- -3'
miRNA:   3'- -GUUGCUU----UGACGGCGGguaUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 52717 0.66 0.821353
Target:  5'- uGGCGAGAgaggGCUGCCUAUGCCg--- -3'
miRNA:   3'- gUUGCUUUga--CGGCGGGUAUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 18748 0.66 0.821353
Target:  5'- -cGCGAcccGCUGCggcaGCUCAUACCCg-- -3'
miRNA:   3'- guUGCUu--UGACGg---CGGGUAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 41894 0.66 0.811649
Target:  5'- uGGCGAAGCUccaacgucaucGCuUGCCCGaGCCCUg- -3'
miRNA:   3'- gUUGCUUUGA-----------CG-GCGGGUaUGGGAaa -5'
12793 5' -52.1 NC_003387.1 + 50447 0.66 0.80174
Target:  5'- cCAGCGAggacGACgucgaGCCGaCCCcgGCCCg-- -3'
miRNA:   3'- -GUUGCU----UUGa----CGGC-GGGuaUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 45381 0.66 0.80174
Target:  5'- cCGGCGGuuAGCUG-CGCCCGgccGCCCg-- -3'
miRNA:   3'- -GUUGCU--UUGACgGCGGGUa--UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 39241 0.66 0.80174
Target:  5'- --cCGggGCUGUCGgUgGUGCCCUc- -3'
miRNA:   3'- guuGCuuUGACGGCgGgUAUGGGAaa -5'
12793 5' -52.1 NC_003387.1 + 31758 0.67 0.791638
Target:  5'- -cGCGGcgUUGcCCGCCCcUGCCCg-- -3'
miRNA:   3'- guUGCUuuGAC-GGCGGGuAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 27168 0.67 0.781355
Target:  5'- -cGCGAAGCUGCUGCCCcucgGCgUg-- -3'
miRNA:   3'- guUGCUUUGACGGCGGGua--UGgGaaa -5'
12793 5' -52.1 NC_003387.1 + 2311 0.67 0.781355
Target:  5'- gCGACGAu-CUGCCGCCCGacguacaGCUCg-- -3'
miRNA:   3'- -GUUGCUuuGACGGCGGGUa------UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 13953 0.67 0.775104
Target:  5'- aCAGCGuguGAUUGCCGCCCcgcggGcaaucucgaaccgcaUGCCCUUc -3'
miRNA:   3'- -GUUGCu--UUGACGGCGGG-----U---------------AUGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 52100 0.67 0.770904
Target:  5'- gCGGCGAcGCUGCCcucGCCC-UGCUCg-- -3'
miRNA:   3'- -GUUGCUuUGACGG---CGGGuAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 11791 0.67 0.770904
Target:  5'- uGGCGAccAGCUcGCCGUCCAUcaggccaccGCCCg-- -3'
miRNA:   3'- gUUGCU--UUGA-CGGCGGGUA---------UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 39427 0.67 0.760297
Target:  5'- --uCGAGGCcGCCGCCCuUGCCg--- -3'
miRNA:   3'- guuGCUUUGaCGGCGGGuAUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 39154 0.67 0.748465
Target:  5'- cCGACGuc-CUGCCcgucgaucgggcuGCCCAgGCCCUUg -3'
miRNA:   3'- -GUUGCuuuGACGG-------------CGGGUaUGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 17031 0.68 0.738668
Target:  5'- gCGGCG--GCUGCCGCCCucGCCg--- -3'
miRNA:   3'- -GUUGCuuUGACGGCGGGuaUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 26292 0.68 0.738668
Target:  5'- aCGGCGuGAGCUGCuCGUcggucaCCAUGCCCa-- -3'
miRNA:   3'- -GUUGC-UUUGACG-GCG------GGUAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 25064 0.68 0.738668
Target:  5'- -uGCGAGauACUGCCGCcgCCGUugACCCa-- -3'
miRNA:   3'- guUGCUU--UGACGGCG--GGUA--UGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.