miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12794 5' -55.2 NC_003387.1 + 28372 0.66 0.68867
Target:  5'- aUGUCGAugGCGCCUGgaucccauuugccuUGcuugcGCCCGGc -3'
miRNA:   3'- aACAGCUugUGCGGGU--------------AUu----CGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 42963 0.66 0.680919
Target:  5'- gUGcCGccccGGCAUGCgCGUGAGCCUGGc -3'
miRNA:   3'- aACaGC----UUGUGCGgGUAUUCGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 8189 0.66 0.669806
Target:  5'- --uUCGAGCccugcgGCGCCgGgcGGCCCGGc -3'
miRNA:   3'- aacAGCUUG------UGCGGgUauUCGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 44710 0.66 0.658656
Target:  5'- -cGUCGGugACGUUCGUuaugccucGCCCGGc -3'
miRNA:   3'- aaCAGCUugUGCGGGUAuu------CGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 30061 0.66 0.658656
Target:  5'- ---aCGAGCGCGCCCugacGGCcgCCGGg -3'
miRNA:   3'- aacaGCUUGUGCGGGuau-UCG--GGCCa -5'
12794 5' -55.2 NC_003387.1 + 23926 0.66 0.658656
Target:  5'- -cGUCGAGC-UGCCCGgcuGGCUCGa- -3'
miRNA:   3'- aaCAGCUUGuGCGGGUau-UCGGGCca -5'
12794 5' -55.2 NC_003387.1 + 34570 0.66 0.647481
Target:  5'- -cGUCGAACucgaugccaacCGCCUugagguGCCCGGUg -3'
miRNA:   3'- aaCAGCUUGu----------GCGGGuauu--CGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 31138 0.66 0.646363
Target:  5'- -cGUCGGccucgcugaugccGCGCGCCU--GGGCCaCGGUc -3'
miRNA:   3'- aaCAGCU-------------UGUGCGGGuaUUCGG-GCCA- -5'
12794 5' -55.2 NC_003387.1 + 48717 0.67 0.640768
Target:  5'- gUUGUCGAGCACcgugcgccgcgacgaGUCCAUGAccGCgCGGg -3'
miRNA:   3'- -AACAGCUUGUG---------------CGGGUAUU--CGgGCCa -5'
12794 5' -55.2 NC_003387.1 + 9991 0.67 0.636291
Target:  5'- ---cCGAGCACGCCCugacGAGCaggucggcguugCCGGUa -3'
miRNA:   3'- aacaGCUUGUGCGGGua--UUCG------------GGCCA- -5'
12794 5' -55.2 NC_003387.1 + 13345 0.67 0.636291
Target:  5'- gUGUCGGGCAUGCUCGaAAGCaUUGGc -3'
miRNA:   3'- aACAGCUUGUGCGGGUaUUCG-GGCCa -5'
12794 5' -55.2 NC_003387.1 + 1230 0.67 0.60274
Target:  5'- -cGUCGAGC-UGCUCcu--GCCCGGUc -3'
miRNA:   3'- aaCAGCUUGuGCGGGuauuCGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 27882 0.67 0.60274
Target:  5'- -gGUCGAGCAggaGCCCGgccagccGCCCGaGUa -3'
miRNA:   3'- aaCAGCUUGUg--CGGGUauu----CGGGC-CA- -5'
12794 5' -55.2 NC_003387.1 + 40122 0.67 0.591595
Target:  5'- aUGUCGA--GCGCCC---GGCCCGa- -3'
miRNA:   3'- aACAGCUugUGCGGGuauUCGGGCca -5'
12794 5' -55.2 NC_003387.1 + 18486 0.67 0.591595
Target:  5'- -gGUCGAGCGC-CCCGaGGGCCUGc- -3'
miRNA:   3'- aaCAGCUUGUGcGGGUaUUCGGGCca -5'
12794 5' -55.2 NC_003387.1 + 20551 0.67 0.580486
Target:  5'- -cGUCGGcUGCGCCgAUAAcGCcCCGGUg -3'
miRNA:   3'- aaCAGCUuGUGCGGgUAUU-CG-GGCCA- -5'
12794 5' -55.2 NC_003387.1 + 49679 0.68 0.569421
Target:  5'- -gGUCGAGCAgUGCUgagCGUGcAGCCCGGc -3'
miRNA:   3'- aaCAGCUUGU-GCGG---GUAU-UCGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 41530 0.68 0.558409
Target:  5'- cUUGUCcGACAUGCCCuu-GGCCCa-- -3'
miRNA:   3'- -AACAGcUUGUGCGGGuauUCGGGcca -5'
12794 5' -55.2 NC_003387.1 + 34685 0.68 0.547458
Target:  5'- -cGaCGAaaaACACG-CCGUGGGCCUGGUa -3'
miRNA:   3'- aaCaGCU---UGUGCgGGUAUUCGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 48250 0.68 0.536575
Target:  5'- -gGUCGGcCGCGgCCAgcAGCUCGGg -3'
miRNA:   3'- aaCAGCUuGUGCgGGUauUCGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.