miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 3' -54.3 NC_003387.1 + 52535 0.67 0.686304
Target:  5'- -cCGCCGAgcugGCGGCCGGGc--GUCAc -3'
miRNA:   3'- caGCGGCUg---CGCCGGCUUuuuCAGUu -5'
12795 3' -54.3 NC_003387.1 + 51169 0.72 0.362663
Target:  5'- uUCGCCGuccuCGgGGCCGA---GGUCGAa -3'
miRNA:   3'- cAGCGGCu---GCgCCGGCUuuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 50979 0.68 0.630417
Target:  5'- --aGCCGAUaGCGGCCGggGgcGUUu- -3'
miRNA:   3'- cagCGGCUG-CGCCGGCuuUuuCAGuu -5'
12795 3' -54.3 NC_003387.1 + 48525 0.69 0.574553
Target:  5'- --gGCCGACacgcgGUGGCCGAAgcaccgcgccGAGGUCAc -3'
miRNA:   3'- cagCGGCUG-----CGCCGGCUU----------UUUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 46354 0.7 0.509201
Target:  5'- cGUCGCC--CGCGGCCGAGGccAAGcgCGAc -3'
miRNA:   3'- -CAGCGGcuGCGCCGGCUUU--UUCa-GUU- -5'
12795 3' -54.3 NC_003387.1 + 45571 0.67 0.697365
Target:  5'- cUCGUCGGCaCGGCCG-AGGAGcCGGg -3'
miRNA:   3'- cAGCGGCUGcGCCGGCuUUUUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 44373 0.67 0.664032
Target:  5'- -aUGCCGAacaGCGGCaCGucGGGGUCGu -3'
miRNA:   3'- caGCGGCUg--CGCCG-GCuuUUUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 43245 0.68 0.585664
Target:  5'- -aCGCCGuacuCGgGGUCGAAAucGUCGg -3'
miRNA:   3'- caGCGGCu---GCgCCGGCUUUuuCAGUu -5'
12795 3' -54.3 NC_003387.1 + 42714 0.66 0.751447
Target:  5'- cGUCGUCGuCGCccGGCCGcgGGAAcgGGUCGGg -3'
miRNA:   3'- -CAGCGGCuGCG--CCGGC--UUUU--UCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 42047 0.76 0.23527
Target:  5'- -cCGCCGAgGCGGCCGu---GGUCGc -3'
miRNA:   3'- caGCGGCUgCGCCGGCuuuuUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 41710 0.74 0.300419
Target:  5'- -gCGCCGACGaaggcggccggggcaCGGCCGAGGAcGUCAc -3'
miRNA:   3'- caGCGGCUGC---------------GCCGGCUUUUuCAGUu -5'
12795 3' -54.3 NC_003387.1 + 41463 1.06 0.00175
Target:  5'- aGUCGCCGACGCGGCCGAAAAAGUCAAu -3'
miRNA:   3'- -CAGCGGCUGCGCCGGCUUUUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 40505 0.67 0.697365
Target:  5'- -aCGCCGGgGCacGCCGGGAAuGUCGGg -3'
miRNA:   3'- caGCGGCUgCGc-CGGCUUUUuCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 39763 0.66 0.730108
Target:  5'- cUCGCCGACGCGGUgCGc--AAGcgCAAc -3'
miRNA:   3'- cAGCGGCUGCGCCG-GCuuuUUCa-GUU- -5'
12795 3' -54.3 NC_003387.1 + 39088 0.68 0.596815
Target:  5'- -cCGCCGACgGUGGCCGGGuuGAAcUCAc -3'
miRNA:   3'- caGCGGCUG-CGCCGGCUU--UUUcAGUu -5'
12795 3' -54.3 NC_003387.1 + 36119 0.71 0.437247
Target:  5'- --aGUCGACGCGGuUCGAGGucGUCGAg -3'
miRNA:   3'- cagCGGCUGCGCC-GGCUUUuuCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 35954 0.66 0.740834
Target:  5'- -aCGCCGcgaaggcCGCGGUCGAGGAGGcccUCGg -3'
miRNA:   3'- caGCGGCu------GCGCCGGCUUUUUC---AGUu -5'
12795 3' -54.3 NC_003387.1 + 35633 0.73 0.328828
Target:  5'- -cCGCCGAgGCGGCCGGGcgGG-CAc -3'
miRNA:   3'- caGCGGCUgCGCCGGCUUuuUCaGUu -5'
12795 3' -54.3 NC_003387.1 + 35561 0.67 0.657321
Target:  5'- -aCGCCGcgauggacuaccucgGCGCccuGGCCGAGcuGGUCGAc -3'
miRNA:   3'- caGCGGC---------------UGCG---CCGGCUUuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 34718 0.67 0.697365
Target:  5'- --gGCgCGACcUGGCCGAGcuGGUCAAg -3'
miRNA:   3'- cagCG-GCUGcGCCGGCUUuuUCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.