miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 45942 0.74 0.093166
Target:  5'- aGCgUGuUCGCCGaCGGCCCGCGCaaggGCg -3'
miRNA:   3'- aCG-GC-AGCGGCaGCCGGGUGCGga--CG- -5'
12795 5' -63.3 NC_003387.1 + 17204 0.74 0.095455
Target:  5'- gGuuGUCGCgcaacacgucugCGUCGGCCCAccacggcCGCUUGCu -3'
miRNA:   3'- aCggCAGCG------------GCAGCCGGGU-------GCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 21666 0.73 0.101007
Target:  5'- cGCCGUCGCCGgugccaUCGGCgCCgguGCCgUGCu -3'
miRNA:   3'- aCGGCAGCGGC------AGCCG-GGug-CGG-ACG- -5'
12795 5' -63.3 NC_003387.1 + 31941 0.73 0.103757
Target:  5'- uUGCCGUUaccaaaGCCGagGGCCgaCGCGCCUuGCa -3'
miRNA:   3'- -ACGGCAG------CGGCagCCGG--GUGCGGA-CG- -5'
12795 5' -63.3 NC_003387.1 + 14495 0.73 0.109469
Target:  5'- uUGCgGUaGCCG-CGGCCauacagguGCGCCUGCg -3'
miRNA:   3'- -ACGgCAgCGGCaGCCGGg-------UGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 15817 0.73 0.109469
Target:  5'- cGCUGUCGCCGcCGGUugUgACGCCgacGCg -3'
miRNA:   3'- aCGGCAGCGGCaGCCG--GgUGCGGa--CG- -5'
12795 5' -63.3 NC_003387.1 + 10515 0.73 0.109469
Target:  5'- cGCCgGUCGCCGUCcugcucGCgCACGCCcGCc -3'
miRNA:   3'- aCGG-CAGCGGCAGc-----CGgGUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 50428 0.72 0.115474
Target:  5'- -aUCGUCGCC-UCGGCgUACGCCaGCg -3'
miRNA:   3'- acGGCAGCGGcAGCCGgGUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 43300 0.72 0.118591
Target:  5'- cGCCcgcGUCGUacuCGUCGGCCCACuCCUcgGCg -3'
miRNA:   3'- aCGG---CAGCG---GCAGCCGGGUGcGGA--CG- -5'
12795 5' -63.3 NC_003387.1 + 31076 0.72 0.118591
Target:  5'- cGCCGcCGCgGUCGacgagcugacGCUCgACGCCUGCc -3'
miRNA:   3'- aCGGCaGCGgCAGC----------CGGG-UGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 21697 0.72 0.125061
Target:  5'- gGCCGccUCGgCGagcgCGGCCCGCGCCg-- -3'
miRNA:   3'- aCGGC--AGCgGCa---GCCGGGUGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 12580 0.72 0.125061
Target:  5'- cGCCGacggugUCGCCGUgGGCCUugaacuugcccgACGCCggGCc -3'
miRNA:   3'- aCGGC------AGCGGCAgCCGGG------------UGCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 46901 0.72 0.125061
Target:  5'- aGCCcggGUCGUCGUgcaCGGCCgCACGCUUGa -3'
miRNA:   3'- aCGG---CAGCGGCA---GCCGG-GUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 46872 0.72 0.126393
Target:  5'- uUGCCGUUGCCGgUGGCaCCGgacuugaggccgcccCGCCUuGCg -3'
miRNA:   3'- -ACGGCAGCGGCaGCCG-GGU---------------GCGGA-CG- -5'
12795 5' -63.3 NC_003387.1 + 26204 0.72 0.128417
Target:  5'- gGCuCGUCGUCGUCGGCCuCGCacuCCUcggGCa -3'
miRNA:   3'- aCG-GCAGCGGCAGCCGG-GUGc--GGA---CG- -5'
12795 5' -63.3 NC_003387.1 + 22957 0.72 0.131856
Target:  5'- cGCCGUagcugaucgucaUGCCGUCGGCguCCAgcuCGCCcGCg -3'
miRNA:   3'- aCGGCA------------GCGGCAGCCG--GGU---GCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 29636 0.72 0.135381
Target:  5'- uUGCCGUacaggaaugUGCUGUCGGCCuUGCGCacgGCg -3'
miRNA:   3'- -ACGGCA---------GCGGCAGCCGG-GUGCGga-CG- -5'
12795 5' -63.3 NC_003387.1 + 38603 0.72 0.135381
Target:  5'- gUGCCGgugaucgaggCGCUGuUCGGCCCGCagGCC-GCg -3'
miRNA:   3'- -ACGGCa---------GCGGC-AGCCGGGUG--CGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 15927 0.72 0.135381
Target:  5'- aGCaCGUCGCgguggcgugcgCGUCGGCCaGCGCCgagUGCc -3'
miRNA:   3'- aCG-GCAGCG-----------GCAGCCGGgUGCGG---ACG- -5'
12795 5' -63.3 NC_003387.1 + 34411 0.71 0.138991
Target:  5'- cGCCGUUGCCG--GGCgCCAcCGCCgcgGCc -3'
miRNA:   3'- aCGGCAGCGGCagCCG-GGU-GCGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.