miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12797 5' -58.9 NC_003387.1 + 32844 0.66 0.532345
Target:  5'- -gCGGGGcgGGGCGguUCC-GCG-UCGCCg -3'
miRNA:   3'- uaGCCCCa-UUCGC--AGGaCGCuGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 9525 0.66 0.532345
Target:  5'- -cCGuGGccGUcAAGCGgugCCUGCGcaaGCCGCCg -3'
miRNA:   3'- uaGC-CC--CA-UUCGCa--GGACGC---UGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 29213 0.66 0.511667
Target:  5'- uUCGGGGUcGGCGcgguuggCCggGCaccagaACCGCCg -3'
miRNA:   3'- uAGCCCCAuUCGCa------GGa-CGc-----UGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 16205 0.66 0.511667
Target:  5'- uGUCGGGGcuca-G-CCUGCG-CUGCCa -3'
miRNA:   3'- -UAGCCCCauucgCaGGACGCuGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 7193 0.66 0.501451
Target:  5'- --aGcGGGUGguGGCGUCaaugGUGGCCGCg -3'
miRNA:   3'- uagC-CCCAU--UCGCAGga--CGCUGGCGg -5'
12797 5' -58.9 NC_003387.1 + 7524 0.66 0.501451
Target:  5'- -cCGaGGGUgaacgaGAGCGgcaCUGCuGCCGCCc -3'
miRNA:   3'- uaGC-CCCA------UUCGCag-GACGcUGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 30255 0.66 0.491328
Target:  5'- cGUCGGGGUcGGCG-CCgggGUcgGGCaGCCa -3'
miRNA:   3'- -UAGCCCCAuUCGCaGGa--CG--CUGgCGG- -5'
12797 5' -58.9 NC_003387.1 + 42741 0.66 0.480302
Target:  5'- gGUCGGGu---GCGcCCUGCGGCggauucuuaugcgCGCCc -3'
miRNA:   3'- -UAGCCCcauuCGCaGGACGCUG-------------GCGG- -5'
12797 5' -58.9 NC_003387.1 + 34777 0.67 0.471371
Target:  5'- -cCGGGGUcuGCccGUCCU-CGGgCGCCu -3'
miRNA:   3'- uaGCCCCAuuCG--CAGGAcGCUgGCGG- -5'
12797 5' -58.9 NC_003387.1 + 51178 0.67 0.470384
Target:  5'- cUCGGGGccgAGGUcgaacagGUCgUGCcACCGCCc -3'
miRNA:   3'- uAGCCCCa--UUCG-------CAGgACGcUGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 24137 0.67 0.461548
Target:  5'- -gCGGcGGUGuugagcuugagGGCGUCgucgacgGCGAUCGCCg -3'
miRNA:   3'- uaGCC-CCAU-----------UCGCAGga-----CGCUGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 37842 0.67 0.461547
Target:  5'- gGUCGGGcaccccuGCGcCCgGCGGCuCGCCu -3'
miRNA:   3'- -UAGCCCcauu---CGCaGGaCGCUG-GCGG- -5'
12797 5' -58.9 NC_003387.1 + 49448 0.67 0.423383
Target:  5'- uGUCGGGGUcguCGUCCauuuCGGCgGCCa -3'
miRNA:   3'- -UAGCCCCAuucGCAGGac--GCUGgCGG- -5'
12797 5' -58.9 NC_003387.1 + 21945 0.67 0.423382
Target:  5'- -gCGGGGgcGGCGgcaggcgUCUGCGG-CGCUg -3'
miRNA:   3'- uaGCCCCauUCGCa------GGACGCUgGCGG- -5'
12797 5' -58.9 NC_003387.1 + 5671 0.68 0.41414
Target:  5'- cUCGGGGUaaaacGAGCGccacgCCUcaugcccgGCcgGGCCGCCa -3'
miRNA:   3'- uAGCCCCA-----UUCGCa----GGA--------CG--CUGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 1394 0.68 0.41414
Target:  5'- gGUCGGGGUcgcGCucgaaGUUgUGCGaggcGCCGCCg -3'
miRNA:   3'- -UAGCCCCAuu-CG-----CAGgACGC----UGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 25032 0.68 0.39425
Target:  5'- uGUCGGGGUcGGCGcagCacucgcgccagagCUGCGagauacuGCCGCCg -3'
miRNA:   3'- -UAGCCCCAuUCGCa--G-------------GACGC-------UGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 43349 0.68 0.387172
Target:  5'- cUCGGGGgu--CG-CCU-CGGCCGCCa -3'
miRNA:   3'- uAGCCCCauucGCaGGAcGCUGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 15545 0.7 0.294285
Target:  5'- cUCGGGGUGccgggccgccagcucGGUGaCCaUGCGcCCGCCc -3'
miRNA:   3'- uAGCCCCAU---------------UCGCaGG-ACGCuGGCGG- -5'
12797 5' -58.9 NC_003387.1 + 36132 0.7 0.291412
Target:  5'- aAUCGuaGUaAAGCGUCCcgGCGuuGCCGCCg -3'
miRNA:   3'- -UAGCccCA-UUCGCAGGa-CGC--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.