miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 3' -55 NC_003387.1 + 52601 0.68 0.578845
Target:  5'- cGAgGGCGACCgCaUCGAGGCgGGcGCg -3'
miRNA:   3'- cUUgUCGCUGG-GcAGCUCCGgUUaCG- -5'
12798 3' -55 NC_003387.1 + 52251 0.67 0.64506
Target:  5'- cGAGCAGCucgcGCCgGUCGccgucGGCCGccGCg -3'
miRNA:   3'- -CUUGUCGc---UGGgCAGCu----CCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 52193 0.66 0.721567
Target:  5'- cGAGCAG-GACgCUGUCGAgcaGGCCGcugaGCa -3'
miRNA:   3'- -CUUGUCgCUG-GGCAGCU---CCGGUua--CG- -5'
12798 3' -55 NC_003387.1 + 51725 0.67 0.656111
Target:  5'- -cGCAGCgcauccGACCCcgGUCGAGcGCCucgGCg -3'
miRNA:   3'- cuUGUCG------CUGGG--CAGCUC-CGGuuaCG- -5'
12798 3' -55 NC_003387.1 + 51623 0.68 0.608559
Target:  5'- -cGCucauGUGACcgCCGUCGAGGCCcugacacuggcaauAGUGCc -3'
miRNA:   3'- cuUGu---CGCUG--GGCAGCUCCGG--------------UUACG- -5'
12798 3' -55 NC_003387.1 + 51503 0.72 0.386322
Target:  5'- gGAGCAGCucgacgagccauGcCCCGUCGAcGGCCAcccuUGCc -3'
miRNA:   3'- -CUUGUCG------------CuGGGCAGCU-CCGGUu---ACG- -5'
12798 3' -55 NC_003387.1 + 51363 0.68 0.600834
Target:  5'- cGACGGCGAggugCCGUggagCGAGGCCGAUu- -3'
miRNA:   3'- cUUGUCGCUg---GGCA----GCUCCGGUUAcg -5'
12798 3' -55 NC_003387.1 + 51089 0.67 0.64506
Target:  5'- aAACAGCGcgcaACCCGcgCGAGGC---UGCc -3'
miRNA:   3'- cUUGUCGC----UGGGCa-GCUCCGguuACG- -5'
12798 3' -55 NC_003387.1 + 51026 0.66 0.710816
Target:  5'- --uCAGCGAUCCaGUCGAccGCCGccGCg -3'
miRNA:   3'- cuuGUCGCUGGG-CAGCUc-CGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 50697 0.68 0.621824
Target:  5'- cGACGGCGG-CCGUCGgcggcaccgagcaGGGCCA--GCg -3'
miRNA:   3'- cUUGUCGCUgGGCAGC-------------UCCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 50468 0.67 0.656111
Target:  5'- cGACccCGGCCCG-CGAGGUCGucgGCa -3'
miRNA:   3'- cUUGucGCUGGGCaGCUCCGGUua-CG- -5'
12798 3' -55 NC_003387.1 + 49738 0.83 0.072841
Target:  5'- cGAGCAGCGcCUCGUCGAGGCCccgaGCg -3'
miRNA:   3'- -CUUGUCGCuGGGCAGCUCCGGuua-CG- -5'
12798 3' -55 NC_003387.1 + 49434 0.69 0.514197
Target:  5'- cGAGuCGGCGGCCgUGUCGGGGUCGu--- -3'
miRNA:   3'- -CUU-GUCGCUGG-GCAGCUCCGGUuacg -5'
12798 3' -55 NC_003387.1 + 49326 0.69 0.518424
Target:  5'- cGACAGCaGgugcucgaucgggauGCCCGcCGAGGCCAgcuuggugAUGCc -3'
miRNA:   3'- cUUGUCG-C---------------UGGGCaGCUCCGGU--------UACG- -5'
12798 3' -55 NC_003387.1 + 49186 0.66 0.699986
Target:  5'- uGAGCAGCcGCCUGgggCGGcGGCgGggGCa -3'
miRNA:   3'- -CUUGUCGcUGGGCa--GCU-CCGgUuaCG- -5'
12798 3' -55 NC_003387.1 + 48533 0.66 0.732229
Target:  5'- -cGCGGUGGCCgaagcaccgCGcCGAGGUCAcGUGCc -3'
miRNA:   3'- cuUGUCGCUGG---------GCaGCUCCGGU-UACG- -5'
12798 3' -55 NC_003387.1 + 48217 0.66 0.721567
Target:  5'- -cGCAGCaGCCgGUCGAgcggGGCCuccGCg -3'
miRNA:   3'- cuUGUCGcUGGgCAGCU----CCGGuuaCG- -5'
12798 3' -55 NC_003387.1 + 46351 0.69 0.535465
Target:  5'- ---aGGCGucGCCCGcggcCGAGGCCAA-GCg -3'
miRNA:   3'- cuugUCGC--UGGGCa---GCUCCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 45098 0.67 0.667141
Target:  5'- --uCGGCGGCCagguCGUCGAcGCCGcgGUg -3'
miRNA:   3'- cuuGUCGCUGG----GCAGCUcCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 44606 0.72 0.377378
Target:  5'- ---gAGCGACgCCGUCG-GGCCGugGCg -3'
miRNA:   3'- cuugUCGCUG-GGCAGCuCCGGUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.