miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 5' -53.9 NC_003387.1 + 39395 1.12 0.000937
Target:  5'- cCGACACGAACGUCUUGCCCAGGUCGCu -3'
miRNA:   3'- -GCUGUGCUUGCAGAACGGGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 44625 0.79 0.176184
Target:  5'- uGGCGCGAGCGUgUgGCCCuGGcCGCg -3'
miRNA:   3'- gCUGUGCUUGCAgAaCGGGuCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 43317 0.77 0.229495
Target:  5'- uCGGCccacuccucgGCGAuCGUCUUGCCCgccucggGGGUCGCc -3'
miRNA:   3'- -GCUG----------UGCUuGCAGAACGGG-------UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 48294 0.74 0.352808
Target:  5'- gGGCucgGCGAACGcCUUGCCCAGcUCGg -3'
miRNA:   3'- gCUG---UGCUUGCaGAACGGGUCcAGCg -5'
12798 5' -53.9 NC_003387.1 + 45853 0.74 0.352808
Target:  5'- aCGACgGCGAccgGCGUCUUguuggcGCCCugagcGGUCGCg -3'
miRNA:   3'- -GCUG-UGCU---UGCAGAA------CGGGu----CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 21549 0.73 0.412461
Target:  5'- gCGACGCccGCGUCgucgugcagaccgugGCCCAGG-CGCg -3'
miRNA:   3'- -GCUGUGcuUGCAGaa-------------CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 22343 0.73 0.424738
Target:  5'- cCGGCGcCGGugGggCUgGCCCAGG-CGCa -3'
miRNA:   3'- -GCUGU-GCUugCa-GAaCGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 3113 0.72 0.460835
Target:  5'- aCGugGCGAugGUCgcgcagaucagcccgGCUCAGGUCa- -3'
miRNA:   3'- -GCugUGCUugCAGaa-------------CGGGUCCAGcg -5'
12798 5' -53.9 NC_003387.1 + 39632 0.72 0.463833
Target:  5'- gCGGCAUGAGCcUCga-CCCGGuGUCGCg -3'
miRNA:   3'- -GCUGUGCUUGcAGaacGGGUC-CAGCG- -5'
12798 5' -53.9 NC_003387.1 + 24509 0.71 0.504727
Target:  5'- cCGuCGCGGcuGCG-CUUGCCgagcugCAGGUCGCc -3'
miRNA:   3'- -GCuGUGCU--UGCaGAACGG------GUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 14931 0.71 0.515197
Target:  5'- gCGAcCGCGggUG-CUgcGCCCAGG-CGCg -3'
miRNA:   3'- -GCU-GUGCuuGCaGAa-CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 36449 0.71 0.515197
Target:  5'- -cGCGCGAGCaG-CUcGCCCAGG-CGCa -3'
miRNA:   3'- gcUGUGCUUG-CaGAaCGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 27242 0.71 0.525753
Target:  5'- uGACACGcGCgGUCgaggcgGCCCGgcaugccuGGUCGCg -3'
miRNA:   3'- gCUGUGCuUG-CAGaa----CGGGU--------CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 28078 0.7 0.546026
Target:  5'- gCGACcucgcgcagcaggGCGAgguGCGUCgggucGCCCAGG-CGCg -3'
miRNA:   3'- -GCUG-------------UGCU---UGCAGaa---CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 29832 0.7 0.5471
Target:  5'- cCGuCGCGucgGUCUUGCCgGGGUCaGCc -3'
miRNA:   3'- -GCuGUGCuugCAGAACGGgUCCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 23408 0.7 0.568715
Target:  5'- -aGCGCGGccugGCGcUCgUGCCCGcGGUCGCc -3'
miRNA:   3'- gcUGUGCU----UGC-AGaACGGGU-CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 31448 0.7 0.568715
Target:  5'- aCGACGCGGuGCGccacCUUGCCCGacuccucGUCGCg -3'
miRNA:   3'- -GCUGUGCU-UGCa---GAACGGGUc------CAGCG- -5'
12798 5' -53.9 NC_003387.1 + 1487 0.7 0.590536
Target:  5'- gGGCGuCG-ACGUCgaGCaCCAGGcCGCg -3'
miRNA:   3'- gCUGU-GCuUGCAGaaCG-GGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 28834 0.69 0.601503
Target:  5'- uCGGCGCGcagcACGUCggccaGCcacaCCGGGUCGCc -3'
miRNA:   3'- -GCUGUGCu---UGCAGaa---CG----GGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 32772 0.69 0.601503
Target:  5'- uCGACGCGGuACcUCUUGCCCGacGUCGa -3'
miRNA:   3'- -GCUGUGCU-UGcAGAACGGGUc-CAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.