miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 5' -53.9 NC_003387.1 + 44625 0.79 0.176184
Target:  5'- uGGCGCGAGCGUgUgGCCCuGGcCGCg -3'
miRNA:   3'- gCUGUGCUUGCAgAaCGGGuCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 7805 0.66 0.783668
Target:  5'- aGGC-CGAgcugcaACGcCUggcgGCCgAGGUCGCc -3'
miRNA:   3'- gCUGuGCU------UGCaGAa---CGGgUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 13693 0.66 0.792531
Target:  5'- uCGGCGuucguccCGAGCGcg--GCCCAGGcggCGCa -3'
miRNA:   3'- -GCUGU-------GCUUGCagaaCGGGUCCa--GCG- -5'
12798 5' -53.9 NC_003387.1 + 44929 0.66 0.81267
Target:  5'- gGGCugGGGCGacgaggcgcUCgcgaagGCUCAGGcCGCg -3'
miRNA:   3'- gCUGugCUUGC---------AGaa----CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 39632 0.72 0.463833
Target:  5'- gCGGCAUGAGCcUCga-CCCGGuGUCGCg -3'
miRNA:   3'- -GCUGUGCUUGcAGaacGGGUC-CAGCG- -5'
12798 5' -53.9 NC_003387.1 + 36449 0.71 0.515197
Target:  5'- -cGCGCGAGCaG-CUcGCCCAGG-CGCa -3'
miRNA:   3'- gcUGUGCUUG-CaGAaCGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 29679 0.69 0.601503
Target:  5'- cCGACGuCG-ACGUCgacgugGCCgAGGUCGa -3'
miRNA:   3'- -GCUGU-GCuUGCAGaa----CGGgUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 10238 0.69 0.611396
Target:  5'- gCGACGCGAugagccgcgccgaGCG-CggGCUCaAGGUCGCc -3'
miRNA:   3'- -GCUGUGCU-------------UGCaGaaCGGG-UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 31711 0.68 0.678475
Target:  5'- aCGAC-C-AACGUgUUaGCgCAGGUCGCa -3'
miRNA:   3'- -GCUGuGcUUGCAgAA-CGgGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 46879 0.66 0.773671
Target:  5'- gCGGCGCccccaccuGCGgCgcaGCCCGGGUCGUc -3'
miRNA:   3'- -GCUGUGcu------UGCaGaa-CGGGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 6288 0.68 0.700228
Target:  5'- aCGACGCGAcCGUggccgUGCugaCCgAGGUCGCc -3'
miRNA:   3'- -GCUGUGCUuGCAga---ACG---GG-UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 48840 0.69 0.645542
Target:  5'- uCGGCGCGAcgcacgGCGUgCacGCCCuGGUgCGCa -3'
miRNA:   3'- -GCUGUGCU------UGCA-GaaCGGGuCCA-GCG- -5'
12798 5' -53.9 NC_003387.1 + 21549 0.73 0.412461
Target:  5'- gCGACGCccGCGUCgucgugcagaccgugGCCCAGG-CGCg -3'
miRNA:   3'- -GCUGUGcuUGCAGaa-------------CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 24941 0.67 0.721715
Target:  5'- cCGACgGCGGGcCGcCUgaugGCCUGGGUCGg -3'
miRNA:   3'- -GCUG-UGCUU-GCaGAa---CGGGUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 22343 0.73 0.424738
Target:  5'- cCGGCGcCGGugGggCUgGCCCAGG-CGCa -3'
miRNA:   3'- -GCUGU-GCUugCa-GAaCGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 34135 0.69 0.634526
Target:  5'- cCGAgGCGGGCGaccCUgacGCCUGGGUCGa -3'
miRNA:   3'- -GCUgUGCUUGCa--GAa--CGGGUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 6585 0.67 0.753248
Target:  5'- gCGACGCGAACGgcaa-CCCGGuGUucCGCg -3'
miRNA:   3'- -GCUGUGCUUGCagaacGGGUC-CA--GCG- -5'
12798 5' -53.9 NC_003387.1 + 52669 0.66 0.783668
Target:  5'- cCGAU-CGAGCGcgUUUGUgCAGGUCaGCg -3'
miRNA:   3'- -GCUGuGCUUGCa-GAACGgGUCCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 3113 0.72 0.460835
Target:  5'- aCGugGCGAugGUCgcgcagaucagcccgGCUCAGGUCa- -3'
miRNA:   3'- -GCugUGCUugCAGaa-------------CGGGUCCAGcg -5'
12798 5' -53.9 NC_003387.1 + 27242 0.71 0.525753
Target:  5'- uGACACGcGCgGUCgaggcgGCCCGgcaugccuGGUCGCg -3'
miRNA:   3'- gCUGUGCuUG-CAGaa----CGGGU--------CCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.