miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 5' -53.9 NC_003387.1 + 1477 0.68 0.689379
Target:  5'- gCGAgGCGAugGgcauaugGCCCAaGGUCaGCg -3'
miRNA:   3'- -GCUgUGCUugCagaa---CGGGU-CCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 1487 0.7 0.590536
Target:  5'- gGGCGuCG-ACGUCgaGCaCCAGGcCGCg -3'
miRNA:   3'- gCUGU-GCuUGCAGaaCG-GGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 2519 0.69 0.623507
Target:  5'- uGACGCGcggguCGUCgUUGCCgucccGGUCGCg -3'
miRNA:   3'- gCUGUGCuu---GCAG-AACGGgu---CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 2853 0.66 0.793508
Target:  5'- aCGACAUGAuCGUC--GgUgAGGUCGCc -3'
miRNA:   3'- -GCUGUGCUuGCAGaaCgGgUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 3113 0.72 0.460835
Target:  5'- aCGugGCGAugGUCgcgcagaucagcccgGCUCAGGUCa- -3'
miRNA:   3'- -GCugUGCUugCAGaa-------------CGGGUCCAGcg -5'
12798 5' -53.9 NC_003387.1 + 6288 0.68 0.700228
Target:  5'- aCGACGCGAcCGUggccgUGCugaCCgAGGUCGCc -3'
miRNA:   3'- -GCUGUGCUuGCAga---ACG---GG-UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 6585 0.67 0.753248
Target:  5'- gCGACGCGAACGgcaa-CCCGGuGUucCGCg -3'
miRNA:   3'- -GCUGUGCUUGCagaacGGGUC-CA--GCG- -5'
12798 5' -53.9 NC_003387.1 + 6695 0.66 0.787623
Target:  5'- aCGACGCucGGCGUCUUGCaCCgcGGGcaguucaccgucgacUCGCc -3'
miRNA:   3'- -GCUGUGc-UUGCAGAACG-GG--UCC---------------AGCG- -5'
12798 5' -53.9 NC_003387.1 + 7805 0.66 0.783668
Target:  5'- aGGC-CGAgcugcaACGcCUggcgGCCgAGGUCGCc -3'
miRNA:   3'- gCUGuGCU------UGCaGAa---CGGgUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 7940 0.68 0.71101
Target:  5'- -cGCGCGGGCcagCUUGUCgAGGUCGg -3'
miRNA:   3'- gcUGUGCUUGca-GAACGGgUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 10238 0.69 0.611396
Target:  5'- gCGACGCGAugagccgcgccgaGCG-CggGCUCaAGGUCGCc -3'
miRNA:   3'- -GCUGUGCU-------------UGCaGaaCGGG-UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 11977 0.69 0.645542
Target:  5'- uCGACGCccgccuugucgaGGGCGcgCUUGgUCAGGUUGCa -3'
miRNA:   3'- -GCUGUG------------CUUGCa-GAACgGGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 13445 0.67 0.742845
Target:  5'- cCGuCGuCGAGCaG-CUUGCCCAGcUCGCc -3'
miRNA:   3'- -GCuGU-GCUUG-CaGAACGGGUCcAGCG- -5'
12798 5' -53.9 NC_003387.1 + 13693 0.66 0.792531
Target:  5'- uCGGCGuucguccCGAGCGcg--GCCCAGGcggCGCa -3'
miRNA:   3'- -GCUGU-------GCUUGCagaaCGGGUCCa--GCG- -5'
12798 5' -53.9 NC_003387.1 + 14931 0.71 0.515197
Target:  5'- gCGAcCGCGggUG-CUgcGCCCAGG-CGCg -3'
miRNA:   3'- -GCU-GUGCuuGCaGAa-CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 21549 0.73 0.412461
Target:  5'- gCGACGCccGCGUCgucgugcagaccgugGCCCAGG-CGCg -3'
miRNA:   3'- -GCUGUGcuUGCAGaa-------------CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 22343 0.73 0.424738
Target:  5'- cCGGCGcCGGugGggCUgGCCCAGG-CGCa -3'
miRNA:   3'- -GCUGU-GCUugCa-GAaCGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 23408 0.7 0.568715
Target:  5'- -aGCGCGGccugGCGcUCgUGCCCGcGGUCGCc -3'
miRNA:   3'- gcUGUGCU----UGC-AGaACGGGU-CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 24422 0.67 0.763527
Target:  5'- gCGAUAcCGAGgGg--UGCCCAGG-CGUg -3'
miRNA:   3'- -GCUGU-GCUUgCagaACGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 24509 0.71 0.504727
Target:  5'- cCGuCGCGGcuGCG-CUUGCCgagcugCAGGUCGCc -3'
miRNA:   3'- -GCuGUGCU--UGCaGAACGG------GUCCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.