Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12800 | 5' | -59.7 | NC_003387.1 | + | 37313 | 1.11 | 0.00029 |
Target: 5'- aCCGCCACCGCCAGUUACGCCGGUGCGg -3' miRNA: 3'- -GGCGGUGGCGGUCAAUGCGGCCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 21664 | 0.83 | 0.035255 |
Target: 5'- cUCGCCGUCGCCGGUgccaucgGCGCCGGUGCc -3' miRNA: 3'- -GGCGGUGGCGGUCAa------UGCGGCCACGc -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 30562 | 0.79 | 0.065462 |
Target: 5'- gCCGCCGCgGCCGGUacGCGCCGugccgcgaGUGCGg -3' miRNA: 3'- -GGCGGUGgCGGUCAa-UGCGGC--------CACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 34428 | 0.79 | 0.073169 |
Target: 5'- aCCGCCGCgGCCGGgucgGCGCUGGUcgaguaguGCGg -3' miRNA: 3'- -GGCGGUGgCGGUCaa--UGCGGCCA--------CGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 46901 | 0.78 | 0.077342 |
Target: 5'- gCCGCC-CCGCCuugcgcggGGUUGCGCUucgguGGUGCGg -3' miRNA: 3'- -GGCGGuGGCGG--------UCAAUGCGG-----CCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 15818 | 0.78 | 0.084031 |
Target: 5'- gCUGUCGCCGCCGGUUgugACGCCgacgcGGUGCc -3' miRNA: 3'- -GGCGGUGGCGGUCAA---UGCGG-----CCACGc -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 30612 | 0.76 | 0.110524 |
Target: 5'- gCCGCCaggGCCGCCGGggaugGCGCCGuacGUGCc -3' miRNA: 3'- -GGCGG---UGGCGGUCaa---UGCGGC---CACGc -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 52310 | 0.76 | 0.119891 |
Target: 5'- -aGCCACCGCCAGcacaGCCucgggGGUGCGa -3' miRNA: 3'- ggCGGUGGCGGUCaaugCGG-----CCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 4527 | 0.75 | 0.129993 |
Target: 5'- gCCGCCGCCGCCGGUgcgggcaccuUGCgGGccUGCGc -3' miRNA: 3'- -GGCGGUGGCGGUCAau--------GCGgCC--ACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 48376 | 0.75 | 0.133532 |
Target: 5'- -aGCCAgUCGCUuacGUUGCGCUGGUGCGc -3' miRNA: 3'- ggCGGU-GGCGGu--CAAUGCGGCCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 37410 | 0.75 | 0.137158 |
Target: 5'- gUCGUCGCCGCgCAGcacaauguCGCCGGUGCc -3' miRNA: 3'- -GGCGGUGGCG-GUCaau-----GCGGCCACGc -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 10687 | 0.74 | 0.148589 |
Target: 5'- gCCGCCucggcggugGCCGCCGGUaucaaGCCGG-GCGa -3' miRNA: 3'- -GGCGG---------UGGCGGUCAaug--CGGCCaCGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 48418 | 0.74 | 0.156684 |
Target: 5'- -aGCCACUGCCGGgu-CGC-GGUGCGc -3' miRNA: 3'- ggCGGUGGCGGUCaauGCGgCCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 13110 | 0.74 | 0.168244 |
Target: 5'- gCCGCCACCucggcgauccacucGUCGGccuCGCUGGUGCGc -3' miRNA: 3'- -GGCGGUGG--------------CGGUCaauGCGGCCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 29365 | 0.74 | 0.169575 |
Target: 5'- gCGaCCugACCGUCAGcgGCGCCGGUGaCGa -3' miRNA: 3'- gGC-GG--UGGCGGUCaaUGCGGCCAC-GC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 3560 | 0.73 | 0.174079 |
Target: 5'- gCGCgACCGCCugc-GCGCUGGUGUGc -3' miRNA: 3'- gGCGgUGGCGGucaaUGCGGCCACGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 22041 | 0.73 | 0.188235 |
Target: 5'- aCGCCcCCGCCGG-UGCGaCCGGgucggggGCGu -3' miRNA: 3'- gGCGGuGGCGGUCaAUGC-GGCCa------CGC- -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 25193 | 0.73 | 0.198228 |
Target: 5'- gCGCCGCCGCCGcGgcaGCGCaucauGGUGCu -3' miRNA: 3'- gGCGGUGGCGGU-Caa-UGCGg----CCACGc -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 16162 | 0.72 | 0.205495 |
Target: 5'- cCCGCCAgcauguUCGCCAGcuuccaauaggcgGCGUCGGUGCu -3' miRNA: 3'- -GGCGGU------GGCGGUCaa-----------UGCGGCCACGc -5' |
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12800 | 5' | -59.7 | NC_003387.1 | + | 29440 | 0.72 | 0.208679 |
Target: 5'- cUCGUCGuuGUC-GUaGCGCCGGUGCGc -3' miRNA: 3'- -GGCGGUggCGGuCAaUGCGGCCACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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