miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 453 0.69 0.340812
Target:  5'- gUCGCCGCCGCggCGGccgacgGCGaCCGGcGCGa -3'
miRNA:   3'- -GGCGGUGGCG--GUCaa----UGC-GGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 476 0.69 0.356927
Target:  5'- gCGUUGCCGUCAGUcuCGaCUGGUGCu -3'
miRNA:   3'- gGCGGUGGCGGUCAauGC-GGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 758 0.7 0.302862
Target:  5'- uCgGCCACCGCggCAGcgACGUCGG-GCa -3'
miRNA:   3'- -GgCGGUGGCG--GUCaaUGCGGCCaCGc -5'
12800 5' -59.7 NC_003387.1 + 874 0.71 0.268248
Target:  5'- -gGCCACCGCggCAGcgACGCCGGU-Ca -3'
miRNA:   3'- ggCGGUGGCG--GUCaaUGCGGCCAcGc -5'
12800 5' -59.7 NC_003387.1 + 981 0.69 0.356927
Target:  5'- aUGCCGCCGCCGag-GCGCCgaccggggucGGaUGCGc -3'
miRNA:   3'- gGCGGUGGCGGUcaaUGCGG----------CC-ACGC- -5'
12800 5' -59.7 NC_003387.1 + 1108 0.66 0.47007
Target:  5'- cCCGCgagcgcggguucgGCCGUgGGUU-CGCCGGUGuCGa -3'
miRNA:   3'- -GGCGg------------UGGCGgUCAAuGCGGCCAC-GC- -5'
12800 5' -59.7 NC_003387.1 + 1423 0.66 0.513709
Target:  5'- gCGCCGCCGCCGacga-GCUGGcaggGCu -3'
miRNA:   3'- gGCGGUGGCGGUcaaugCGGCCa---CGc -5'
12800 5' -59.7 NC_003387.1 + 2192 0.66 0.487705
Target:  5'- -aGCCACCGCgGgcucaggggugccucGUgcuCGCCGGUcagGCGg -3'
miRNA:   3'- ggCGGUGGCGgU---------------CAau-GCGGCCA---CGC- -5'
12800 5' -59.7 NC_003387.1 + 2577 0.66 0.493652
Target:  5'- aCGCCGacCCGUCGGUcgACGCCuGGccGCa -3'
miRNA:   3'- gGCGGU--GGCGGUCAa-UGCGG-CCa-CGc -5'
12800 5' -59.7 NC_003387.1 + 3298 0.66 0.503637
Target:  5'- aCgGCCGCCGaCuCGG--GCGCCgaGGUGCu -3'
miRNA:   3'- -GgCGGUGGC-G-GUCaaUGCGG--CCACGc -5'
12800 5' -59.7 NC_003387.1 + 3331 0.69 0.340812
Target:  5'- uCCGCCugCGCagcgUGCGCaguguGGUGCu -3'
miRNA:   3'- -GGCGGugGCGgucaAUGCGg----CCACGc -5'
12800 5' -59.7 NC_003387.1 + 3534 0.66 0.479828
Target:  5'- cCCGCCGCCGCCccAGgcggcugcucagGCGCUcaacgaGG-GCGg -3'
miRNA:   3'- -GGCGGUGGCGG--UCaa----------UGCGG------CCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 3560 0.73 0.174079
Target:  5'- gCGCgACCGCCugc-GCGCUGGUGUGc -3'
miRNA:   3'- gGCGgUGGCGGucaaUGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 3898 0.66 0.513709
Target:  5'- gCCGCUgcccgacccugACCGCCugGGUgcuaACGCcCGGUGgGc -3'
miRNA:   3'- -GGCGG-----------UGGCGG--UCAa---UGCG-GCCACgC- -5'
12800 5' -59.7 NC_003387.1 + 3931 0.69 0.340812
Target:  5'- gCCGCCGCCGCggcgauCAGcgGCgaGCUGGcUGCGc -3'
miRNA:   3'- -GGCGGUGGCG------GUCaaUG--CGGCC-ACGC- -5'
12800 5' -59.7 NC_003387.1 + 4484 0.67 0.435816
Target:  5'- gCCGCgGCCGaCCGGgcGCGacaCGaucGUGCGg -3'
miRNA:   3'- -GGCGgUGGC-GGUCaaUGCg--GC---CACGC- -5'
12800 5' -59.7 NC_003387.1 + 4527 0.75 0.129993
Target:  5'- gCCGCCGCCGCCGGUgcgggcaccuUGCgGGccUGCGc -3'
miRNA:   3'- -GGCGGUGGCGGUCAau--------GCGgCC--ACGC- -5'
12800 5' -59.7 NC_003387.1 + 4808 0.71 0.261721
Target:  5'- cCUGCCGCCGaCCAGcgcgUGCGCaagcucGUGCGu -3'
miRNA:   3'- -GGCGGUGGC-GGUCa---AUGCGgc----CACGC- -5'
12800 5' -59.7 NC_003387.1 + 5973 0.66 0.473961
Target:  5'- gUCGCUcgACCcgGCCGGUUGcCGCC-GUGCa -3'
miRNA:   3'- -GGCGG--UGG--CGGUCAAU-GCGGcCACGc -5'
12800 5' -59.7 NC_003387.1 + 6201 0.7 0.310183
Target:  5'- aCGCCGCCGUUGGUgcaguCGCCGa-GCGa -3'
miRNA:   3'- gGCGGUGGCGGUCAau---GCGGCcaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.