miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 37313 1.11 0.00029
Target:  5'- aCCGCCACCGCCAGUUACGCCGGUGCGg -3'
miRNA:   3'- -GGCGGUGGCGGUCAAUGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 21664 0.83 0.035255
Target:  5'- cUCGCCGUCGCCGGUgccaucgGCGCCGGUGCc -3'
miRNA:   3'- -GGCGGUGGCGGUCAa------UGCGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 30562 0.79 0.065462
Target:  5'- gCCGCCGCgGCCGGUacGCGCCGugccgcgaGUGCGg -3'
miRNA:   3'- -GGCGGUGgCGGUCAa-UGCGGC--------CACGC- -5'
12800 5' -59.7 NC_003387.1 + 34428 0.79 0.073169
Target:  5'- aCCGCCGCgGCCGGgucgGCGCUGGUcgaguaguGCGg -3'
miRNA:   3'- -GGCGGUGgCGGUCaa--UGCGGCCA--------CGC- -5'
12800 5' -59.7 NC_003387.1 + 46901 0.78 0.077342
Target:  5'- gCCGCC-CCGCCuugcgcggGGUUGCGCUucgguGGUGCGg -3'
miRNA:   3'- -GGCGGuGGCGG--------UCAAUGCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 15818 0.78 0.084031
Target:  5'- gCUGUCGCCGCCGGUUgugACGCCgacgcGGUGCc -3'
miRNA:   3'- -GGCGGUGGCGGUCAA---UGCGG-----CCACGc -5'
12800 5' -59.7 NC_003387.1 + 30612 0.76 0.110524
Target:  5'- gCCGCCaggGCCGCCGGggaugGCGCCGuacGUGCc -3'
miRNA:   3'- -GGCGG---UGGCGGUCaa---UGCGGC---CACGc -5'
12800 5' -59.7 NC_003387.1 + 52310 0.76 0.119891
Target:  5'- -aGCCACCGCCAGcacaGCCucgggGGUGCGa -3'
miRNA:   3'- ggCGGUGGCGGUCaaugCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 4527 0.75 0.129993
Target:  5'- gCCGCCGCCGCCGGUgcgggcaccuUGCgGGccUGCGc -3'
miRNA:   3'- -GGCGGUGGCGGUCAau--------GCGgCC--ACGC- -5'
12800 5' -59.7 NC_003387.1 + 48376 0.75 0.133532
Target:  5'- -aGCCAgUCGCUuacGUUGCGCUGGUGCGc -3'
miRNA:   3'- ggCGGU-GGCGGu--CAAUGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 37410 0.75 0.137158
Target:  5'- gUCGUCGCCGCgCAGcacaauguCGCCGGUGCc -3'
miRNA:   3'- -GGCGGUGGCG-GUCaau-----GCGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 10687 0.74 0.148589
Target:  5'- gCCGCCucggcggugGCCGCCGGUaucaaGCCGG-GCGa -3'
miRNA:   3'- -GGCGG---------UGGCGGUCAaug--CGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 48418 0.74 0.156684
Target:  5'- -aGCCACUGCCGGgu-CGC-GGUGCGc -3'
miRNA:   3'- ggCGGUGGCGGUCaauGCGgCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 13110 0.74 0.168244
Target:  5'- gCCGCCACCucggcgauccacucGUCGGccuCGCUGGUGCGc -3'
miRNA:   3'- -GGCGGUGG--------------CGGUCaauGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 29365 0.74 0.169575
Target:  5'- gCGaCCugACCGUCAGcgGCGCCGGUGaCGa -3'
miRNA:   3'- gGC-GG--UGGCGGUCaaUGCGGCCAC-GC- -5'
12800 5' -59.7 NC_003387.1 + 3560 0.73 0.174079
Target:  5'- gCGCgACCGCCugc-GCGCUGGUGUGc -3'
miRNA:   3'- gGCGgUGGCGGucaaUGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 22041 0.73 0.188235
Target:  5'- aCGCCcCCGCCGG-UGCGaCCGGgucggggGCGu -3'
miRNA:   3'- gGCGGuGGCGGUCaAUGC-GGCCa------CGC- -5'
12800 5' -59.7 NC_003387.1 + 25193 0.73 0.198228
Target:  5'- gCGCCGCCGCCGcGgcaGCGCaucauGGUGCu -3'
miRNA:   3'- gGCGGUGGCGGU-Caa-UGCGg----CCACGc -5'
12800 5' -59.7 NC_003387.1 + 16162 0.72 0.205495
Target:  5'- cCCGCCAgcauguUCGCCAGcuuccaauaggcgGCGUCGGUGCu -3'
miRNA:   3'- -GGCGGU------GGCGGUCaa-----------UGCGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 29440 0.72 0.208679
Target:  5'- cUCGUCGuuGUC-GUaGCGCCGGUGCGc -3'
miRNA:   3'- -GGCGGUggCGGuCAaUGCGGCCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.