miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 30562 0.79 0.065462
Target:  5'- gCCGCCGCgGCCGGUacGCGCCGugccgcgaGUGCGg -3'
miRNA:   3'- -GGCGGUGgCGGUCAa-UGCGGC--------CACGC- -5'
12800 5' -59.7 NC_003387.1 + 9850 0.67 0.417418
Target:  5'- uUCGCCucGCCGCCGGgcAC-CgCGGUGUu -3'
miRNA:   3'- -GGCGG--UGGCGGUCaaUGcG-GCCACGc -5'
12800 5' -59.7 NC_003387.1 + 12388 0.67 0.425639
Target:  5'- uCUGCCGCUGCUgcagGCGaucaacuCCGGUGCGc -3'
miRNA:   3'- -GGCGGUGGCGGucaaUGC-------GGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 48731 0.66 0.513709
Target:  5'- gCCGCCACgGCCgccucaauccucGGgaACGUcacgcacgCGGUGCu -3'
miRNA:   3'- -GGCGGUGgCGG------------UCaaUGCG--------GCCACGc -5'
12800 5' -59.7 NC_003387.1 + 24799 0.72 0.212448
Target:  5'- cCCGCCcccgaggcgcccacGCCGCCGGUcaaggccgcgugUGCGCUgucugcggccgGGUGCGu -3'
miRNA:   3'- -GGCGG--------------UGGCGGUCA------------AUGCGG-----------CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 46813 0.7 0.295673
Target:  5'- cCCGCgCugCGUUAGcucGCuGCCGGUGCa -3'
miRNA:   3'- -GGCG-GugGCGGUCaa-UG-CGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 50395 0.69 0.332954
Target:  5'- cUCGaCACCGCCgAGcugUACGUCGG-GCGg -3'
miRNA:   3'- -GGCgGUGGCGG-UCa--AUGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 453 0.69 0.340812
Target:  5'- gUCGCCGCCGCggCGGccgacgGCGaCCGGcGCGa -3'
miRNA:   3'- -GGCGGUGGCG--GUCaa----UGC-GGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 42437 0.69 0.356927
Target:  5'- gUCGUCACCGagCGGUUcaAgGCCGaGUGCGc -3'
miRNA:   3'- -GGCGGUGGCg-GUCAA--UgCGGC-CACGC- -5'
12800 5' -59.7 NC_003387.1 + 33769 0.68 0.399503
Target:  5'- gCGgCGCCGCgagCGGUUugGCCcggcuGGUGCc -3'
miRNA:   3'- gGCgGUGGCG---GUCAAugCGG-----CCACGc -5'
12800 5' -59.7 NC_003387.1 + 37443 0.68 0.37357
Target:  5'- -aGCCGCCGaCGGUUGCcauGCUGGcgGCGc -3'
miRNA:   3'- ggCGGUGGCgGUCAAUG---CGGCCa-CGC- -5'
12800 5' -59.7 NC_003387.1 + 51425 0.69 0.356927
Target:  5'- gCGgCGCCGCCucgaacUGCGCCGGU-CGa -3'
miRNA:   3'- gGCgGUGGCGGuca---AUGCGGCCAcGC- -5'
12800 5' -59.7 NC_003387.1 + 10687 0.74 0.148589
Target:  5'- gCCGCCucggcggugGCCGCCGGUaucaaGCCGG-GCGa -3'
miRNA:   3'- -GGCGG---------UGGCGGUCAaug--CGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 6852 0.68 0.378664
Target:  5'- gCGCgACCGCuCAGggcgccaacaagACGCCGGUcGCc -3'
miRNA:   3'- gGCGgUGGCG-GUCaa----------UGCGGCCA-CGc -5'
12800 5' -59.7 NC_003387.1 + 29365 0.74 0.169575
Target:  5'- gCGaCCugACCGUCAGcgGCGCCGGUGaCGa -3'
miRNA:   3'- gGC-GG--UGGCGGUCaaUGCGGCCAC-GC- -5'
12800 5' -59.7 NC_003387.1 + 44984 0.69 0.356927
Target:  5'- gCCGCUGCCGCCGa----GgCGGUGCu -3'
miRNA:   3'- -GGCGGUGGCGGUcaaugCgGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 22066 0.68 0.390731
Target:  5'- aCCGgCACCGUUGGcgACGgCGGUaGCGc -3'
miRNA:   3'- -GGCgGUGGCGGUCaaUGCgGCCA-CGC- -5'
12800 5' -59.7 NC_003387.1 + 13641 0.67 0.417418
Target:  5'- cCCgGCCACCGUCGGcgGCGgCuCGGUcGCc -3'
miRNA:   3'- -GG-CGGUGGCGGUCaaUGC-G-GCCA-CGc -5'
12800 5' -59.7 NC_003387.1 + 25193 0.73 0.198228
Target:  5'- gCGCCGCCGCCGcGgcaGCGCaucauGGUGCu -3'
miRNA:   3'- gGCGGUGGCGGU-Caa-UGCGg----CCACGc -5'
12800 5' -59.7 NC_003387.1 + 44646 0.7 0.302862
Target:  5'- gCCGCgGCCucggcgauccugGCCgAGggGCuGCCGGUGCu -3'
miRNA:   3'- -GGCGgUGG------------CGG-UCaaUG-CGGCCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.