miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 52713 0.75 0.258777
Target:  5'- cCCCGCgaaCGAUCGCGgcgccCCUCG-CGGCa -3'
miRNA:   3'- -GGGUGa--GCUAGCGCa----GGAGCuGCUGc -5'
12804 5' -55.6 NC_003387.1 + 52431 0.71 0.472482
Target:  5'- aCCgGCUCGGUCGUGaucgugCaCUCGACcGGCGc -3'
miRNA:   3'- -GGgUGAGCUAGCGCa-----G-GAGCUG-CUGC- -5'
12804 5' -55.6 NC_003387.1 + 52003 0.69 0.543673
Target:  5'- aCCUGCcCGAccugUCG-GcCCUCGACGACGa -3'
miRNA:   3'- -GGGUGaGCU----AGCgCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 51739 0.76 0.222249
Target:  5'- cCCCGgUCGA--GCG-CCUCGGCGGCGg -3'
miRNA:   3'- -GGGUgAGCUagCGCaGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 51542 0.66 0.774852
Target:  5'- aCCAUgUCGuccAUCGCGUUCUCGGUGAgGa -3'
miRNA:   3'- gGGUG-AGC---UAGCGCAGGAGCUGCUgC- -5'
12804 5' -55.6 NC_003387.1 + 51357 0.74 0.314157
Target:  5'- gCCACUgCGAgcggucgucggggUCgGCGUCCUCGuCGGCGg -3'
miRNA:   3'- gGGUGA-GCU-------------AG-CGCAGGAGCuGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 51236 0.66 0.744874
Target:  5'- gCCUgguGCUCGAcgUCGaCGcccuggcCCUCGACGACc -3'
miRNA:   3'- -GGG---UGAGCU--AGC-GCa------GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 48822 0.71 0.443425
Target:  5'- uCCCGC-CGGUCGUGcUgCUCGgcGCGACGc -3'
miRNA:   3'- -GGGUGaGCUAGCGC-AgGAGC--UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 48312 0.69 0.564692
Target:  5'- gCCCAgCUCGGcgUCGaCGUUCugccaguagUCGACGGCGu -3'
miRNA:   3'- -GGGU-GAGCU--AGC-GCAGG---------AGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 48227 0.68 0.62875
Target:  5'- aCCCGCaCGAUCGUGUCgCgcccggUCGGCcGCGg -3'
miRNA:   3'- -GGGUGaGCUAGCGCAG-G------AGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 47848 0.67 0.670552
Target:  5'- gCCugUCGAaacCGCuuauggcgcagcgGUCCUaCGACGACa -3'
miRNA:   3'- gGGugAGCUa--GCG-------------CAGGA-GCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 47296 0.73 0.346259
Target:  5'- gCC-CUCGGUCGaguuGUCCUCGGCGGg- -3'
miRNA:   3'- gGGuGAGCUAGCg---CAGGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 46772 0.66 0.75499
Target:  5'- uCCCGCcgaGGUCG-GUCCUCG-CG-CGg -3'
miRNA:   3'- -GGGUGag-CUAGCgCAGGAGCuGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 46443 0.77 0.200408
Target:  5'- gCCA--CGGUCGCGUCgUCGAUGACGu -3'
miRNA:   3'- gGGUgaGCUAGCGCAGgAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 46245 0.7 0.496403
Target:  5'- gCCCGgUUGGUCGCGccgacaaugucggacUCgUUGGCGACGc -3'
miRNA:   3'- -GGGUgAGCUAGCGC---------------AGgAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 45746 0.67 0.67162
Target:  5'- gUCCAgUUG-UCGuCGcCCUCGACGAgGg -3'
miRNA:   3'- -GGGUgAGCuAGC-GCaGGAGCUGCUgC- -5'
12804 5' -55.6 NC_003387.1 + 45255 0.69 0.568923
Target:  5'- gCgGCUCGGugaucgccuggcccaUCGCGUUCUCGcCGACc -3'
miRNA:   3'- gGgUGAGCU---------------AGCGCAGGAGCuGCUGc -5'
12804 5' -55.6 NC_003387.1 + 44780 0.68 0.637339
Target:  5'- gCCCGacCUCGAcaagcuggcccgCGCGaUCCUCGACGGg- -3'
miRNA:   3'- -GGGU--GAGCUa-----------GCGC-AGGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 43792 0.66 0.75499
Target:  5'- aCCgGCgUCGccCGCuUCCUCGACGAg- -3'
miRNA:   3'- -GGgUG-AGCuaGCGcAGGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 43371 0.76 0.252365
Target:  5'- aCCgGCUCG-UCGaCGUCCuggugcUCGACGACGu -3'
miRNA:   3'- -GGgUGAGCuAGC-GCAGG------AGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.