miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 48083 0.69 0.426377
Target:  5'- gCCGgGCCUUGUCCUUaUCGGcCuuGGCc -3'
miRNA:   3'- -GGUgCGGAACGGGAAcAGCCaGc-CCG- -5'
12805 5' -58 NC_003387.1 + 15956 0.69 0.426377
Target:  5'- cUCGCGCCUgcaUGUgCUUG-CGGuggaggacaauUCGGGCc -3'
miRNA:   3'- -GGUGCGGA---ACGgGAACaGCC-----------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 28298 0.68 0.435735
Target:  5'- gCACGCCUggGCaCCcc-UCGGUaucgCGGGCg -3'
miRNA:   3'- gGUGCGGAa-CG-GGaacAGCCA----GCCCG- -5'
12805 5' -58 NC_003387.1 + 7506 0.68 0.435735
Target:  5'- aCCACGCCacgaucgGCCgCggGUCGaaCGGGCc -3'
miRNA:   3'- -GGUGCGGaa-----CGG-GaaCAGCcaGCCCG- -5'
12805 5' -58 NC_003387.1 + 50918 0.68 0.453836
Target:  5'- gCCGCGCCggucagcuucaccUUGaCCUUG-CGGgcuuucagcUCGGGCg -3'
miRNA:   3'- -GGUGCGG-------------AACgGGAACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 37379 0.68 0.454801
Target:  5'- -gGCGgCggcGCCCcgcUGUCGGuaUCGGGCa -3'
miRNA:   3'- ggUGCgGaa-CGGGa--ACAGCC--AGCCCG- -5'
12805 5' -58 NC_003387.1 + 33422 0.68 0.458667
Target:  5'- gUCACGCCgagcuggaucgggcUGCCCgaggCGGUCaGGCc -3'
miRNA:   3'- -GGUGCGGa-------------ACGGGaacaGCCAGcCCG- -5'
12805 5' -58 NC_003387.1 + 22995 0.68 0.464501
Target:  5'- cCCGCGUagcUGCCgUcGUCGGcCuGGGCg -3'
miRNA:   3'- -GGUGCGga-ACGGgAaCAGCCaG-CCCG- -5'
12805 5' -58 NC_003387.1 + 47420 0.68 0.474308
Target:  5'- uCCACGCUcacccGCCCa----GGUUGGGCg -3'
miRNA:   3'- -GGUGCGGaa---CGGGaacagCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 42760 0.68 0.474308
Target:  5'- gCUGCGCUggUGCCC----CGaGUCGGGCa -3'
miRNA:   3'- -GGUGCGGa-ACGGGaacaGC-CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 31947 0.68 0.47826
Target:  5'- uCCGCGCCggucgcauccccgGCCgCaagGUCGGUCGucacuGGCg -3'
miRNA:   3'- -GGUGCGGaa-----------CGG-Gaa-CAGCCAGC-----CCG- -5'
12805 5' -58 NC_003387.1 + 20457 0.68 0.482228
Target:  5'- cCCACGCCUUGUcggCCUcGgcgacggccaggCGGUCGGccaGCu -3'
miRNA:   3'- -GGUGCGGAACG---GGAaCa-----------GCCAGCC---CG- -5'
12805 5' -58 NC_003387.1 + 30235 0.67 0.491214
Target:  5'- uUCGCGCCagUUGgCCgggucGUCGGggucggcgccggggUCGGGCa -3'
miRNA:   3'- -GGUGCGG--AACgGGaa---CAGCC--------------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 48151 0.67 0.504328
Target:  5'- gCGCGCCaccgagGCCCgcg-CGGUCGcgcaGGCg -3'
miRNA:   3'- gGUGCGGaa----CGGGaacaGCCAGC----CCG- -5'
12805 5' -58 NC_003387.1 + 18968 0.67 0.511451
Target:  5'- gCgGCGCCgccgUUGCCCUUGcCGGggugccgcuuagacgGGGCc -3'
miRNA:   3'- -GgUGCGG----AACGGGAACaGCCag-------------CCCG- -5'
12805 5' -58 NC_003387.1 + 46904 0.67 0.524789
Target:  5'- gCCcCGCCUUGCgCgggGUugcgcuucggUGGUgCGGGCg -3'
miRNA:   3'- -GGuGCGGAACGgGaa-CA----------GCCA-GCCCG- -5'
12805 5' -58 NC_003387.1 + 38716 0.67 0.524789
Target:  5'- gUACGCCggguUGCCCUgccagucauUCGGauacUUGGGCg -3'
miRNA:   3'- gGUGCGGa---ACGGGAac-------AGCC----AGCCCG- -5'
12805 5' -58 NC_003387.1 + 45653 0.67 0.52479
Target:  5'- gC-CGCCUgGCgCCgaaggUGUcCGGUCaGGGCg -3'
miRNA:   3'- gGuGCGGAaCG-GGa----ACA-GCCAG-CCCG- -5'
12805 5' -58 NC_003387.1 + 26552 0.67 0.53099
Target:  5'- gCACGCgacgacaugacGCCCUUGcgggCGGUgcCGGGCa -3'
miRNA:   3'- gGUGCGgaa--------CGGGAACa---GCCA--GCCCG- -5'
12805 5' -58 NC_003387.1 + 45547 0.67 0.535139
Target:  5'- aCC-CGCUUgaucgGCCCcgguguuggUGUCGGgacCGGGUa -3'
miRNA:   3'- -GGuGCGGAa----CGGGa--------ACAGCCa--GCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.