Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12808 | 5' | -51.9 | NC_003387.1 | + | 33770 | 1.14 | 0.001251 |
Target: 5'- cCGACGAAACCGAGGAUCUUGCCGACCg -3' miRNA: 3'- -GCUGCUUUGGCUCCUAGAACGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 24782 | 0.81 | 0.192357 |
Target: 5'- aCGAgcCGGAACCGcucGGGGUCgcgGCCGACCu -3' miRNA: 3'- -GCU--GCUUUGGC---UCCUAGaa-CGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 9405 | 0.79 | 0.238213 |
Target: 5'- aGACGAucGCCGAGGAguggGCCGACg -3' miRNA: 3'- gCUGCUu-UGGCUCCUagaaCGGCUGg -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 23687 | 0.78 | 0.300348 |
Target: 5'- cCGGCGuGAGCCGAGGGgcgcugUUUGCUGACUu -3' miRNA: 3'- -GCUGC-UUUGGCUCCUa-----GAACGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 10030 | 0.78 | 0.300348 |
Target: 5'- aCGACGAGccgaagcgcGCCGAGGG-CgcggUGUCGGCCg -3' miRNA: 3'- -GCUGCUU---------UGGCUCCUaGa---ACGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 43836 | 0.76 | 0.374286 |
Target: 5'- gGGCGAGGCCGAGG-UCgggGCgGugCa -3' miRNA: 3'- gCUGCUUUGGCUCCuAGaa-CGgCugG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 41713 | 0.76 | 0.386842 |
Target: 5'- cCGACGAAggcggccggggcacgGCCGAGGAcgUCacccgGCUGGCCg -3' miRNA: 3'- -GCUGCUU---------------UGGCUCCU--AGaa---CGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 43439 | 0.75 | 0.429997 |
Target: 5'- uCGACGAGGCCaAGG-UCaagcUGCUGACCg -3' miRNA: 3'- -GCUGCUUUGGcUCCuAGa---ACGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 6288 | 0.74 | 0.490288 |
Target: 5'- aCGACGcGACCGuGGccg-UGCUGACCg -3' miRNA: 3'- -GCUGCuUUGGCuCCuagaACGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 44655 | 0.73 | 0.500723 |
Target: 5'- uCGGCGAuccuGGCCGAGGggC-UGCCGgugcucGCCa -3' miRNA: 3'- -GCUGCU----UUGGCUCCuaGaACGGC------UGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 6669 | 0.73 | 0.521878 |
Target: 5'- cCGACGcggcGAUCGAGGugaUUGCCGACa -3' miRNA: 3'- -GCUGCu---UUGGCUCCuagAACGGCUGg -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 43978 | 0.73 | 0.521878 |
Target: 5'- uGGCGAAGCUGAcGGuUCacGUCGACCg -3' miRNA: 3'- gCUGCUUUGGCU-CCuAGaaCGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 25374 | 0.73 | 0.54337 |
Target: 5'- gCGGCGAggUCGAGGggCUgcggcUGCuCGACg -3' miRNA: 3'- -GCUGCUuuGGCUCCuaGA-----ACG-GCUGg -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 33595 | 0.73 | 0.54337 |
Target: 5'- gCGACGAAgaucccGCCGAGGugug-GCaCGACCu -3' miRNA: 3'- -GCUGCUU------UGGCUCCuagaaCG-GCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 40631 | 0.72 | 0.58714 |
Target: 5'- -aGCG--GCCGAGGugAUCUUGCCGGgCa -3' miRNA: 3'- gcUGCuuUGGCUCC--UAGAACGGCUgG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 45256 | 0.72 | 0.598199 |
Target: 5'- gGACGcgGCUGGaauGGAUCgccacGCCGACCc -3' miRNA: 3'- gCUGCuuUGGCU---CCUAGaa---CGGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 48012 | 0.71 | 0.620398 |
Target: 5'- uCGACGAGucggcGCCGuGGAUCggcacgUGCgGGCa -3' miRNA: 3'- -GCUGCUU-----UGGCuCCUAGa-----ACGgCUGg -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 5734 | 0.71 | 0.653749 |
Target: 5'- cCGGCaAGACCGAGGAcgagCUgaacgccucgGCCGACg -3' miRNA: 3'- -GCUGcUUUGGCUCCUa---GAa---------CGGCUGg -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 50155 | 0.7 | 0.675899 |
Target: 5'- cCGACGGGucggcguacacGgCGAGGAUCUgccgcGgCGACCg -3' miRNA: 3'- -GCUGCUU-----------UgGCUCCUAGAa----CgGCUGG- -5' |
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12808 | 5' | -51.9 | NC_003387.1 | + | 50237 | 0.7 | 0.675899 |
Target: 5'- aCGGCGccuaccGGAUCGAGGAggugGCCGACg -3' miRNA: 3'- -GCUGC------UUUGGCUCCUagaaCGGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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