miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 5' -63.6 NC_003387.1 + 30100 1.09 0.000143
Target:  5'- gGCGGGCGGCCAGGGCCGCCAAGUGACc -3'
miRNA:   3'- -CGCCCGCCGGUCCCGGCGGUUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 11276 0.81 0.023472
Target:  5'- -aGGGCGGCguCAGGGCCGCgCcGGUGACc -3'
miRNA:   3'- cgCCCGCCG--GUCCCGGCG-GuUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 41706 0.78 0.040052
Target:  5'- cGCGgcgccgacgaaGGCGGCCGGGGCacgGCCGAG-GACg -3'
miRNA:   3'- -CGC-----------CCGCCGGUCCCGg--CGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 17723 0.74 0.082336
Target:  5'- gGCGGuGCgccccggcccGGCC-GGGCCGCCAGG-GGCc -3'
miRNA:   3'- -CGCC-CG----------CCGGuCCCGGCGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 46300 0.73 0.089366
Target:  5'- aGCaGGCGGCgCAgcGGGCCGCUggGaagGGCa -3'
miRNA:   3'- -CGcCCGCCG-GU--CCCGGCGGuuCa--CUG- -5'
12817 5' -63.6 NC_003387.1 + 38506 0.73 0.094366
Target:  5'- cGUGGGCGuGCgAGGGCgGC-AAGUGAg -3'
miRNA:   3'- -CGCCCGC-CGgUCCCGgCGgUUCACUg -5'
12817 5' -63.6 NC_003387.1 + 15546 0.73 0.09963
Target:  5'- uCGGG-GuGCC-GGGCCGCCAgcucGGUGACc -3'
miRNA:   3'- cGCCCgC-CGGuCCCGGCGGU----UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 35555 0.72 0.102364
Target:  5'- cGCccaGGCGGCgCAccagcucagcgcGGGCCGCCG-GUGACa -3'
miRNA:   3'- -CGc--CCGCCG-GU------------CCCGGCGGUuCACUG- -5'
12817 5' -63.6 NC_003387.1 + 25410 0.72 0.113719
Target:  5'- cGCGGcgaucacggcgacGCGGCUcucaAGGGCCGCCAGuGcGGCg -3'
miRNA:   3'- -CGCC-------------CGCCGG----UCCCGGCGGUU-CaCUG- -5'
12817 5' -63.6 NC_003387.1 + 30611 0.72 0.114025
Target:  5'- ---uGCcGCCAGGGCCGCCGGGgaUGGCg -3'
miRNA:   3'- cgccCGcCGGUCCCGGCGGUUC--ACUG- -5'
12817 5' -63.6 NC_003387.1 + 18575 0.72 0.119989
Target:  5'- uGCGGGUcgacccaGGCguCAGGGUCGCCcgccucGGUGGCg -3'
miRNA:   3'- -CGCCCG-------CCG--GUCCCGGCGGu-----UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 49232 0.71 0.126918
Target:  5'- uCGaGGCGGCCgAGcGGCUGCUcgacgccgGGGUGACg -3'
miRNA:   3'- cGC-CCGCCGG-UC-CCGGCGG--------UUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 30506 0.71 0.130346
Target:  5'- uGCcGG-GGCCGGGGCCGCgAgagcccgcuugGGUGGCc -3'
miRNA:   3'- -CGcCCgCCGGUCCCGGCGgU-----------UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 2722 0.71 0.137459
Target:  5'- cGCGGGCGGC--GGGCagGCCAcgcagcagccGGUGAa -3'
miRNA:   3'- -CGCCCGCCGguCCCGg-CGGU----------UCACUg -5'
12817 5' -63.6 NC_003387.1 + 4617 0.71 0.141148
Target:  5'- aGCcaaGGCGGCCAaGGCgGCCAAGgccgauaagGACa -3'
miRNA:   3'- -CGc--CCGCCGGUcCCGgCGGUUCa--------CUG- -5'
12817 5' -63.6 NC_003387.1 + 1116 0.7 0.148799
Target:  5'- cGCGGGUucGGCCGuGGGuUCGCCGGuGUcGACg -3'
miRNA:   3'- -CGCCCG--CCGGU-CCC-GGCGGUU-CA-CUG- -5'
12817 5' -63.6 NC_003387.1 + 45099 0.7 0.164813
Target:  5'- --cGGCGGCCAGGucgucgacGCCGCgGuguacgaGGUGACg -3'
miRNA:   3'- cgcCCGCCGGUCC--------CGGCGgU-------UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 18424 0.7 0.165243
Target:  5'- cGCGGGCuGCUcGGGCaGCCAcGUGuACg -3'
miRNA:   3'- -CGCCCGcCGGuCCCGgCGGUuCAC-UG- -5'
12817 5' -63.6 NC_003387.1 + 19831 0.69 0.174063
Target:  5'- --cGGUGGCCGGGGCagguguuguCGUCGAGcUGGCa -3'
miRNA:   3'- cgcCCGCCGGUCCCG---------GCGGUUC-ACUG- -5'
12817 5' -63.6 NC_003387.1 + 1957 0.69 0.188079
Target:  5'- cGCGGGUcuGGCC-GGGCagCGCCAGcuUGACc -3'
miRNA:   3'- -CGCCCG--CCGGuCCCG--GCGGUUc-ACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.