miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 5' -63.6 NC_003387.1 + 41706 0.78 0.040052
Target:  5'- cGCGgcgccgacgaaGGCGGCCGGGGCacgGCCGAG-GACg -3'
miRNA:   3'- -CGC-----------CCGCCGGUCCCGg--CGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 33377 0.68 0.224685
Target:  5'- cGCGGGCGGauGGGacGCCGCCGca-GGCa -3'
miRNA:   3'- -CGCCCGCCggUCC--CGGCGGUucaCUG- -5'
12817 5' -63.6 NC_003387.1 + 41995 0.67 0.235614
Target:  5'- cGCGGugcucaaGCGG-UGGGGCCGCCuggccGUGAUg -3'
miRNA:   3'- -CGCC-------CGCCgGUCCCGGCGGuu---CACUG- -5'
12817 5' -63.6 NC_003387.1 + 40363 0.66 0.315904
Target:  5'- cGUGaucGCGGCCGGGGCCaaggGCCuc--GACg -3'
miRNA:   3'- -CGCc--CGCCGGUCCCGG----CGGuucaCUG- -5'
12817 5' -63.6 NC_003387.1 + 49232 0.71 0.126918
Target:  5'- uCGaGGCGGCCgAGcGGCUGCUcgacgccgGGGUGACg -3'
miRNA:   3'- cGC-CCGCCGG-UC-CCGGCGG--------UUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 2722 0.71 0.137459
Target:  5'- cGCGGGCGGC--GGGCagGCCAcgcagcagccGGUGAa -3'
miRNA:   3'- -CGCCCGCCGguCCCGg-CGGU----------UCACUg -5'
12817 5' -63.6 NC_003387.1 + 1116 0.7 0.148799
Target:  5'- cGCGGGUucGGCCGuGGGuUCGCCGGuGUcGACg -3'
miRNA:   3'- -CGCCCG--CCGGU-CCC-GGCGGUU-CA-CUG- -5'
12817 5' -63.6 NC_003387.1 + 45099 0.7 0.164813
Target:  5'- --cGGCGGCCAGGucgucgacGCCGCgGuguacgaGGUGACg -3'
miRNA:   3'- cgcCCGCCGGUCC--------CGGCGgU-------UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 4661 0.68 0.219107
Target:  5'- gGCGccaaGCGGCCGacGCCGCCAAGcaaGACg -3'
miRNA:   3'- -CGCc---CGCCGGUccCGGCGGUUCa--CUG- -5'
12817 5' -63.6 NC_003387.1 + 29568 0.68 0.224685
Target:  5'- uGUGGGUgcucgacuucgaGGCCgaGGGGCCggaGCCGGGcGACu -3'
miRNA:   3'- -CGCCCG------------CCGG--UCCCGG---CGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 37461 0.68 0.219107
Target:  5'- uGCuGGCGGCgCuGcGCCGCCAaaaggugccGGUGACc -3'
miRNA:   3'- -CGcCCGCCG-GuCcCGGCGGU---------UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 39232 0.68 0.213647
Target:  5'- aGCGGGUaccgGcGCCGGgcgaGGCCGUCGAGUucGACc -3'
miRNA:   3'- -CGCCCG----C-CGGUC----CCGGCGGUUCA--CUG- -5'
12817 5' -63.6 NC_003387.1 + 17723 0.74 0.082336
Target:  5'- gGCGGuGCgccccggcccGGCC-GGGCCGCCAGG-GGCc -3'
miRNA:   3'- -CGCC-CG----------CCGGuCCCGGCGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 25824 0.68 0.219107
Target:  5'- uGCucGGCGGCCuGGGCggugGCCugcucGGUGGCg -3'
miRNA:   3'- -CGc-CCGCCGGuCCCGg---CGGu----UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 46300 0.73 0.089366
Target:  5'- aGCaGGCGGCgCAgcGGGCCGCUggGaagGGCa -3'
miRNA:   3'- -CGcCCGCCG-GU--CCCGGCGGuuCa--CUG- -5'
12817 5' -63.6 NC_003387.1 + 13654 0.68 0.213647
Target:  5'- gGC-GGCGGCUc-GGUCGCCGAG-GGCg -3'
miRNA:   3'- -CGcCCGCCGGucCCGGCGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 47163 0.68 0.224685
Target:  5'- aGCGGGCaccgcgguGGCCcuGGuGGUCGCCcucggggcucAGGUGGCc -3'
miRNA:   3'- -CGCCCG--------CCGG--UC-CCGGCGG----------UUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 46984 0.68 0.230382
Target:  5'- uGCGGGCGacgacgacgaGCgC-GGGCCGCCuGGUG-Cu -3'
miRNA:   3'- -CGCCCGC----------CG-GuCCCGGCGGuUCACuG- -5'
12817 5' -63.6 NC_003387.1 + 38506 0.73 0.094366
Target:  5'- cGUGGGCGuGCgAGGGCgGC-AAGUGAg -3'
miRNA:   3'- -CGCCCGC-CGgUCCCGgCGgUUCACUg -5'
12817 5' -63.6 NC_003387.1 + 4617 0.71 0.141148
Target:  5'- aGCcaaGGCGGCCAaGGCgGCCAAGgccgauaagGACa -3'
miRNA:   3'- -CGc--CCGCCGGUcCCGgCGGUUCa--------CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.