miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 5' -63.6 NC_003387.1 + 1116 0.7 0.148799
Target:  5'- cGCGGGUucGGCCGuGGGuUCGCCGGuGUcGACg -3'
miRNA:   3'- -CGCCCG--CCGGU-CCC-GGCGGUU-CA-CUG- -5'
12817 5' -63.6 NC_003387.1 + 1957 0.69 0.188079
Target:  5'- cGCGGGUcuGGCC-GGGCagCGCCAGcuUGACc -3'
miRNA:   3'- -CGCCCG--CCGGuCCCG--GCGGUUc-ACUG- -5'
12817 5' -63.6 NC_003387.1 + 2393 0.67 0.254401
Target:  5'- cGCGGGCGGCCugaaugaagucGGGG-CGCaucgcguUGACg -3'
miRNA:   3'- -CGCCCGCCGG-----------UCCCgGCGguuc---ACUG- -5'
12817 5' -63.6 NC_003387.1 + 2722 0.71 0.137459
Target:  5'- cGCGGGCGGC--GGGCagGCCAcgcagcagccGGUGAa -3'
miRNA:   3'- -CGCCCGCCGguCCCGg-CGGU----------UCACUg -5'
12817 5' -63.6 NC_003387.1 + 2969 0.67 0.260719
Target:  5'- aGCGGGUGGaCCGGcaGCaagGCCGAGUG-Cu -3'
miRNA:   3'- -CGCCCGCC-GGUCc-CGg--CGGUUCACuG- -5'
12817 5' -63.6 NC_003387.1 + 4617 0.71 0.141148
Target:  5'- aGCcaaGGCGGCCAaGGCgGCCAAGgccgauaagGACa -3'
miRNA:   3'- -CGc--CCGCCGGUcCCGgCGGUUCa--------CUG- -5'
12817 5' -63.6 NC_003387.1 + 4661 0.68 0.219107
Target:  5'- gGCGccaaGCGGCCGacGCCGCCAAGcaaGACg -3'
miRNA:   3'- -CGCc---CGCCGGUccCGGCGGUUCa--CUG- -5'
12817 5' -63.6 NC_003387.1 + 5816 0.66 0.285207
Target:  5'- aGCGuGCGGCCGugcacgacgaccucGGGCUGCgccgCAGGUGGg -3'
miRNA:   3'- -CGCcCGCCGGU--------------CCCGGCG----GUUCACUg -5'
12817 5' -63.6 NC_003387.1 + 6126 0.67 0.242144
Target:  5'- cGCGGcaGCGGCUugAGGG-CGCCAcuGUGAg -3'
miRNA:   3'- -CGCC--CGCCGG--UCCCgGCGGUu-CACUg -5'
12817 5' -63.6 NC_003387.1 + 6324 0.67 0.254401
Target:  5'- aGCuGGGCGGCCAGGcGaUCGgCAAGaaGCu -3'
miRNA:   3'- -CG-CCCGCCGGUCC-C-GGCgGUUCacUG- -5'
12817 5' -63.6 NC_003387.1 + 6421 0.67 0.236202
Target:  5'- cGCGGugacuGCgGGCCA-GGCCGUCGAGgucgugGGCg -3'
miRNA:   3'- -CGCC-----CG-CCGGUcCCGGCGGUUCa-----CUG- -5'
12817 5' -63.6 NC_003387.1 + 7337 0.69 0.197967
Target:  5'- uCGGGCGGCCGGGcGCaGCUAAccgccGGCa -3'
miRNA:   3'- cGCCCGCCGGUCC-CGgCGGUUca---CUG- -5'
12817 5' -63.6 NC_003387.1 + 7942 0.66 0.315904
Target:  5'- cGCGGGCcagcuugucgaGGUC-GGGCCGCUucacGGcgGGCg -3'
miRNA:   3'- -CGCCCG-----------CCGGuCCCGGCGGu---UCa-CUG- -5'
12817 5' -63.6 NC_003387.1 + 7983 0.66 0.294232
Target:  5'- cGCGcGGa-GCaGGGGCCGCaacAGUGACu -3'
miRNA:   3'- -CGC-CCgcCGgUCCCGGCGgu-UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 8091 0.67 0.236202
Target:  5'- -aGGccGCGGCCAGGGCCacacgcucgcGCCAcGgcccGACg -3'
miRNA:   3'- cgCC--CGCCGGUCCCGG----------CGGUuCa---CUG- -5'
12817 5' -63.6 NC_003387.1 + 10671 0.68 0.219107
Target:  5'- cGCGGcuGCGaCCAcGGCCGCCucggcGGUGGCc -3'
miRNA:   3'- -CGCC--CGCcGGUcCCGGCGGu----UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 10774 0.66 0.315904
Target:  5'- cGCuGGCGGCCugcaucgucGGGUCGUCGGcGUcGGCg -3'
miRNA:   3'- -CGcCCGCCGGu--------CCCGGCGGUU-CA-CUG- -5'
12817 5' -63.6 NC_003387.1 + 11276 0.81 0.023472
Target:  5'- -aGGGCGGCguCAGGGCCGCgCcGGUGACc -3'
miRNA:   3'- cgCCCGCCG--GUCCCGGCG-GuUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 12895 0.66 0.308549
Target:  5'- cGUGaGCGGCCucgacggcguGGGGgUGCCuaguGGUGGCu -3'
miRNA:   3'- -CGCcCGCCGG----------UCCCgGCGGu---UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 13654 0.68 0.213647
Target:  5'- gGC-GGCGGCUc-GGUCGCCGAG-GGCg -3'
miRNA:   3'- -CGcCCGCCGGucCCGGCGGUUCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.