miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12827 3' -62.9 NC_003387.1 + 879 0.66 0.373384
Target:  5'- cCGCGGCaGCGacGCCggucaGGAUCUUCuGCaGCa -3'
miRNA:   3'- -GCGCCGcCGC--CGG-----CCUAGAAG-CG-CGg -5'
12827 3' -62.9 NC_003387.1 + 26574 0.66 0.373384
Target:  5'- uGCgGGCGGU-GCCGGGcaugCUggcUCGUGCUg -3'
miRNA:   3'- gCG-CCGCCGcCGGCCUa---GA---AGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 27661 0.66 0.368442
Target:  5'- -aCGGCGGCGGCaguaucucgcagcucUGGcgCgagugcUGCGCCg -3'
miRNA:   3'- gcGCCGCCGCCG---------------GCCuaGaa----GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 8085 0.66 0.365172
Target:  5'- uCGCcgaGGCcGCGGCCaGGGccacacgC-UCGCGCCa -3'
miRNA:   3'- -GCG---CCGcCGCCGG-CCUa------GaAGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 38865 0.66 0.357087
Target:  5'- -uCGGCGGCucGCCGGccguuagCUagaCGCGCCg -3'
miRNA:   3'- gcGCCGCCGc-CGGCCua-----GAa--GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 34994 0.66 0.357087
Target:  5'- gGCGGCccGGCcgGGCCGGGg---CGCaccGCCu -3'
miRNA:   3'- gCGCCG--CCG--CCGGCCUagaaGCG---CGG- -5'
12827 3' -62.9 NC_003387.1 + 38056 0.66 0.357087
Target:  5'- uCG-GGCGGUGGCUGag-Cga-GCGCCg -3'
miRNA:   3'- -GCgCCGCCGCCGGCcuaGaagCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 21798 0.66 0.349128
Target:  5'- cCGCGGCGGCcaGCuCGGcgag-CGaCGCCg -3'
miRNA:   3'- -GCGCCGCCGc-CG-GCCuagaaGC-GCGG- -5'
12827 3' -62.9 NC_003387.1 + 42825 0.66 0.349128
Target:  5'- cCGaCGGCGGCgaggcgaucauGGCgGcGAUCgaggUCGUGCa -3'
miRNA:   3'- -GC-GCCGCCG-----------CCGgC-CUAGa---AGCGCGg -5'
12827 3' -62.9 NC_003387.1 + 51753 0.66 0.349128
Target:  5'- uGCGGaaagucucuGCGGCCgugcGGGUCcggUGCGCCg -3'
miRNA:   3'- gCGCCgc-------CGCCGG----CCUAGaa-GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 34500 0.66 0.349128
Target:  5'- cCGCGGgcgaccaGGUcGCCGG-UCgUCGCGUCg -3'
miRNA:   3'- -GCGCCg------CCGcCGGCCuAGaAGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 51224 0.66 0.341296
Target:  5'- aCGuCGGCcGCGGCCuGGugcUCgacgUCGaCGCCc -3'
miRNA:   3'- -GC-GCCGcCGCCGG-CCu--AGa---AGC-GCGG- -5'
12827 3' -62.9 NC_003387.1 + 28928 0.66 0.333592
Target:  5'- gCGCGGCGGCGagguucacGCCuGAgugUCGUGUa -3'
miRNA:   3'- -GCGCCGCCGC--------CGGcCUagaAGCGCGg -5'
12827 3' -62.9 NC_003387.1 + 40887 0.67 0.326016
Target:  5'- cCGCGGCGaccuaaucaaGGCCGcGAUCgcggUCGgGCg -3'
miRNA:   3'- -GCGCCGCcg--------CCGGC-CUAGa---AGCgCGg -5'
12827 3' -62.9 NC_003387.1 + 46312 0.67 0.326016
Target:  5'- cCGCaGUcaccGCGGCCGGAaUCa--GCGCCg -3'
miRNA:   3'- -GCGcCGc---CGCCGGCCU-AGaagCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 31927 0.67 0.326016
Target:  5'- aGCGGUGGCuaCCGagcaGAUC--CGCGCCg -3'
miRNA:   3'- gCGCCGCCGccGGC----CUAGaaGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 22312 0.67 0.323768
Target:  5'- cCGCcuGGUGGC-GCCGGAUCagguaacucucccgGCGCCg -3'
miRNA:   3'- -GCG--CCGCCGcCGGCCUAGaag-----------CGCGG- -5'
12827 3' -62.9 NC_003387.1 + 42722 0.67 0.318569
Target:  5'- uCGCccGGCcGCGGgaaCGGGUCgggUGCGCCc -3'
miRNA:   3'- -GCG--CCGcCGCCg--GCCUAGaa-GCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 23307 0.67 0.318569
Target:  5'- cCGCuGCGGCGGCCuccUCc-UGCGCCc -3'
miRNA:   3'- -GCGcCGCCGCCGGccuAGaaGCGCGG- -5'
12827 3' -62.9 NC_003387.1 + 23061 0.67 0.318569
Target:  5'- aCGuCGGCgaGGCGuucgagcaGCCGGuuacUCGCGCCg -3'
miRNA:   3'- -GC-GCCG--CCGC--------CGGCCuagaAGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.