Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12834 | 3' | -56.2 | NC_003387.1 | + | 21775 | 0.66 | 0.6844 |
Target: 5'- -cUGGGCAGCCagcggcGCACGAUC-UGcGaCGg -3' miRNA: 3'- gaGCCCGUCGG------UGUGCUAGuAC-CaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 47212 | 0.66 | 0.6844 |
Target: 5'- -gCGGGCgAGCCGCugcuCGAUCAccuuGUCa -3' miRNA: 3'- gaGCCCG-UCGGUGu---GCUAGUac--CAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 26578 | 0.66 | 0.6844 |
Target: 5'- cCUCGGGgucaGGCCGCGCGAgc--GG-CGa -3' miRNA: 3'- -GAGCCCg---UCGGUGUGCUaguaCCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 3725 | 0.66 | 0.6844 |
Target: 5'- -gCGGccaCAGCCACGCGAUCGacGGcCGc -3' miRNA: 3'- gaGCCc--GUCGGUGUGCUAGUa-CCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 35636 | 0.66 | 0.673544 |
Target: 5'- -cCGaGGCGGCCGgGCGggCAcUGGcCGa -3' miRNA: 3'- gaGC-CCGUCGGUgUGCuaGU-ACCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 13561 | 0.66 | 0.66265 |
Target: 5'- -cUGGGCAGCCcgaucgacggGCAgGAcgUCGgcUGGUCGc -3' miRNA: 3'- gaGCCCGUCGG----------UGUgCU--AGU--ACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 14271 | 0.66 | 0.651727 |
Target: 5'- -aCGGGCAGaaCACGCaGUCGUGGg-- -3' miRNA: 3'- gaGCCCGUCg-GUGUGcUAGUACCagc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 52420 | 0.66 | 0.651727 |
Target: 5'- gCUCGGGCu-CCACcggcuCGGUCGUGaUCGu -3' miRNA: 3'- -GAGCCCGucGGUGu----GCUAGUACcAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 20472 | 0.66 | 0.651727 |
Target: 5'- cCUCGGcGaCGGCCAgGCGGUCGgccagcucGUCGc -3' miRNA: 3'- -GAGCC-C-GUCGGUgUGCUAGUac------CAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 1604 | 0.66 | 0.651727 |
Target: 5'- gUCGcaCGGCCugGCGAUUucGGUCGg -3' miRNA: 3'- gAGCccGUCGGugUGCUAGuaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 10227 | 0.66 | 0.645164 |
Target: 5'- gUCGGGCauccgcgacgcgaugAGCCGCGcCGAgcgcgggcUCAaGGUCGc -3' miRNA: 3'- gAGCCCG---------------UCGGUGU-GCU--------AGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 40918 | 0.66 | 0.640786 |
Target: 5'- gUCGGGCgguGGCCugAUGGaCGgcgagcUGGUCGc -3' miRNA: 3'- gAGCCCG---UCGGugUGCUaGU------ACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 11303 | 0.66 | 0.640786 |
Target: 5'- cCUCGGGUAGCUcgaACAgCGAcUCGUgcugcgccucGGUCGc -3' miRNA: 3'- -GAGCCCGUCGG---UGU-GCU-AGUA----------CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 28612 | 0.66 | 0.629838 |
Target: 5'- -aCGGGCAcGUCGagguGCGcaucccugaGUCAUGGUCGg -3' miRNA: 3'- gaGCCCGU-CGGUg---UGC---------UAGUACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 22654 | 0.66 | 0.629838 |
Target: 5'- gCUCGccccGGCGGCCgucaggGCGCGcUCGUGGgCGg -3' miRNA: 3'- -GAGC----CCGUCGG------UGUGCuAGUACCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 10771 | 0.66 | 0.629838 |
Target: 5'- cCUCGcuGGCGGCCuGCAUcGUCG-GGUCGu -3' miRNA: 3'- -GAGC--CCGUCGG-UGUGcUAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 33437 | 0.66 | 0.629838 |
Target: 5'- aUCGGGCuGCCcgAgGCGGUCA-GGcCGc -3' miRNA: 3'- gAGCCCGuCGG--UgUGCUAGUaCCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 17050 | 0.67 | 0.618892 |
Target: 5'- -cCGGGCGucGUCgaggACGCGAUCGagugGGUCGa -3' miRNA: 3'- gaGCCCGU--CGG----UGUGCUAGUa---CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 36000 | 0.67 | 0.607957 |
Target: 5'- aCUCGGcGUcGUCGC-CGAUCAcgaGGUCGa -3' miRNA: 3'- -GAGCC-CGuCGGUGuGCUAGUa--CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 48211 | 0.67 | 0.597043 |
Target: 5'- --gGcGGCGGCCgaggugacccGCACGAUCGUgucgcgcccGGUCGg -3' miRNA: 3'- gagC-CCGUCGG----------UGUGCUAGUA---------CCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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