Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12842 | 5' | -65.2 | NC_003387.1 | + | 16573 | 1.04 | 0.000258 |
Target: 5'- cAUCCGGCCGACCGCCUCGUCGGGGCUc -3' miRNA: 3'- -UAGGCCGGCUGGCGGAGCAGCCCCGA- -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 17093 | 0.76 | 0.045047 |
Target: 5'- -cCCGcCCGGCCGCCUCGgcgggcuccUCGGGGCc -3' miRNA: 3'- uaGGCcGGCUGGCGGAGC---------AGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 51740 | 0.76 | 0.048921 |
Target: 5'- -cCCGGUCGAgCGCCUCGgCGGcGGCa -3' miRNA: 3'- uaGGCCGGCUgGCGGAGCaGCC-CCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 32246 | 0.72 | 0.086645 |
Target: 5'- -gCUGGCCGACCGCCUggcCGUCGccgaGGCc -3' miRNA: 3'- uaGGCCGGCUGGCGGA---GCAGCc---CCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 34258 | 0.71 | 0.104513 |
Target: 5'- -aCCGGCUGAUCGCCgaGUCGGGcGUc -3' miRNA: 3'- uaGGCCGGCUGGCGGagCAGCCC-CGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 23840 | 0.71 | 0.110225 |
Target: 5'- -cCCGcGCCuaaGCCGCCgcaGUCGGGGCc -3' miRNA: 3'- uaGGC-CGGc--UGGCGGag-CAGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 44842 | 0.7 | 0.136109 |
Target: 5'- aGUgCGGCCGACCucaaggucgguGCCguagcCGUCGgGGGCg -3' miRNA: 3'- -UAgGCCGGCUGG-----------CGGa----GCAGC-CCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 3096 | 0.7 | 0.136109 |
Target: 5'- -gCUcGCCGACCGgCUCGuaaaUCGGGGCc -3' miRNA: 3'- uaGGcCGGCUGGCgGAGC----AGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 20350 | 0.7 | 0.139713 |
Target: 5'- -gUCGGCCagcccCCGCCUCGUgCGGGGg- -3' miRNA: 3'- uaGGCCGGcu---GGCGGAGCA-GCCCCga -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 8521 | 0.7 | 0.139714 |
Target: 5'- cUCgGGCCGACCGgCUCG-CGGGuaGUUa -3' miRNA: 3'- uAGgCCGGCUGGCgGAGCaGCCC--CGA- -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 6962 | 0.7 | 0.139714 |
Target: 5'- -cCCuGCUGGCCGcCCUCGUCGaGGGg- -3' miRNA: 3'- uaGGcCGGCUGGC-GGAGCAGC-CCCga -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 49432 | 0.69 | 0.147185 |
Target: 5'- -cCCGaGUCGGCgGCCgUGUCGGGGUc -3' miRNA: 3'- uaGGC-CGGCUGgCGGaGCAGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 15610 | 0.69 | 0.151056 |
Target: 5'- -cCCGGCCGA-CGUCgagcaCGUCGaGGGCg -3' miRNA: 3'- uaGGCCGGCUgGCGGa----GCAGC-CCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 22170 | 0.69 | 0.155019 |
Target: 5'- -aCCGGCCGcggcgGCgGuCCaUGUCGGGGCg -3' miRNA: 3'- uaGGCCGGC-----UGgC-GGaGCAGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 27920 | 0.69 | 0.159076 |
Target: 5'- -aCCGGCggcgUGGgCGCCUCGgggggggcucggUCGGGGCg -3' miRNA: 3'- uaGGCCG----GCUgGCGGAGC------------AGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 11481 | 0.69 | 0.163228 |
Target: 5'- uUCaUGGCCGACaauGCCUCGUgGGcGGUg -3' miRNA: 3'- uAG-GCCGGCUGg--CGGAGCAgCC-CCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 31013 | 0.69 | 0.163228 |
Target: 5'- gAUCgGGCCGAgCGUg-CGcCGGGGCg -3' miRNA: 3'- -UAGgCCGGCUgGCGgaGCaGCCCCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 49485 | 0.69 | 0.167049 |
Target: 5'- uUUCGGCCGGugcgcCCGCCcggCGUCgacgugucgcaauGGGGCUg -3' miRNA: 3'- uAGGCCGGCU-----GGCGGa--GCAG-------------CCCCGA- -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 11005 | 0.68 | 0.171387 |
Target: 5'- -cUCGGCCGugccccgGCCGCCuUCGUCGGcGCc -3' miRNA: 3'- uaGGCCGGC-------UGGCGG-AGCAGCCcCGa -5' |
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12842 | 5' | -65.2 | NC_003387.1 | + | 22494 | 0.68 | 0.176276 |
Target: 5'- -aCCGGgCGACgGCCUCGgCGGcGCg -3' miRNA: 3'- uaGGCCgGCUGgCGGAGCaGCCcCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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