miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12842 5' -65.2 NC_003387.1 + 699 0.68 0.185483
Target:  5'- ---gGGCCuuGAUCGCCUCGUCGucgaGGGCc -3'
miRNA:   3'- uaggCCGG--CUGGCGGAGCAGC----CCCGa -5'
12842 5' -65.2 NC_003387.1 + 2922 0.66 0.238086
Target:  5'- -aCCGGCUGAUCGUgUCG-CGGuucGGCg -3'
miRNA:   3'- uaGGCCGGCUGGCGgAGCaGCC---CCGa -5'
12842 5' -65.2 NC_003387.1 + 3096 0.7 0.136109
Target:  5'- -gCUcGCCGACCGgCUCGuaaaUCGGGGCc -3'
miRNA:   3'- uaGGcCGGCUGGCgGAGC----AGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 3483 0.66 0.247579
Target:  5'- -cCCGGCgucgagcagccgcuCGGCCGCCUCGaccggcagauccgUUGcGGGCUc -3'
miRNA:   3'- uaGGCCG--------------GCUGGCGGAGC-------------AGC-CCCGA- -5'
12842 5' -65.2 NC_003387.1 + 6962 0.7 0.139714
Target:  5'- -cCCuGCUGGCCGcCCUCGUCGaGGGg- -3'
miRNA:   3'- uaGGcCGGCUGGC-GGAGCAGC-CCCga -5'
12842 5' -65.2 NC_003387.1 + 8521 0.7 0.139714
Target:  5'- cUCgGGCCGACCGgCUCG-CGGGuaGUUa -3'
miRNA:   3'- uAGgCCGGCUGGCgGAGCaGCCC--CGA- -5'
12842 5' -65.2 NC_003387.1 + 9895 0.67 0.200088
Target:  5'- -gCC-GCCauGAUCGCCUCGccgccgUCGGGGCUc -3'
miRNA:   3'- uaGGcCGG--CUGGCGGAGC------AGCCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 10672 0.67 0.210373
Target:  5'- --gCGGCugcgaccaCGGCCGCCUCGgCGGuGGCc -3'
miRNA:   3'- uagGCCG--------GCUGGCGGAGCaGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 11005 0.68 0.171387
Target:  5'- -cUCGGCCGugccccgGCCGCCuUCGUCGGcGCc -3'
miRNA:   3'- uaGGCCGGC-------UGGCGG-AGCAGCCcCGa -5'
12842 5' -65.2 NC_003387.1 + 11481 0.69 0.163228
Target:  5'- uUCaUGGCCGACaauGCCUCGUgGGcGGUg -3'
miRNA:   3'- uAG-GCCGGCUGg--CGGAGCAgCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 11678 0.66 0.250001
Target:  5'- gAUCgGGCUGAuuaUCGCCgcggUCGUCGGGcucGCUg -3'
miRNA:   3'- -UAGgCCGGCU---GGCGG----AGCAGCCC---CGA- -5'
12842 5' -65.2 NC_003387.1 + 11968 0.67 0.205174
Target:  5'- -cUCGGUguauCGAcgcCCGCCUUGUCGaGGGCg -3'
miRNA:   3'- uaGGCCG----GCU---GGCGGAGCAGC-CCCGa -5'
12842 5' -65.2 NC_003387.1 + 12705 0.66 0.262403
Target:  5'- uUCCcGCgCGAgCGCC-CG-CGGGGCUc -3'
miRNA:   3'- uAGGcCG-GCUgGCGGaGCaGCCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 15610 0.69 0.151056
Target:  5'- -cCCGGCCGA-CGUCgagcaCGUCGaGGGCg -3'
miRNA:   3'- uaGGCCGGCUgGCGGa----GCAGC-CCCGa -5'
12842 5' -65.2 NC_003387.1 + 16573 1.04 0.000258
Target:  5'- cAUCCGGCCGACCGCCUCGUCGGGGCUc -3'
miRNA:   3'- -UAGGCCGGCUGGCGGAGCAGCCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 17093 0.76 0.045047
Target:  5'- -cCCGcCCGGCCGCCUCGgcgggcuccUCGGGGCc -3'
miRNA:   3'- uaGGCcGGCUGGCGGAGC---------AGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 17738 0.67 0.200088
Target:  5'- -cCCGGCCgGGCCGCCa----GGGGCc -3'
miRNA:   3'- uaGGCCGG-CUGGCGGagcagCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 18770 0.68 0.176276
Target:  5'- cGUCgCGuGUCGACUGCCcuUUGUCGGGGa- -3'
miRNA:   3'- -UAG-GC-CGGCUGGCGG--AGCAGCCCCga -5'
12842 5' -65.2 NC_003387.1 + 20350 0.7 0.139713
Target:  5'- -gUCGGCCagcccCCGCCUCGUgCGGGGg- -3'
miRNA:   3'- uaGGCCGGcu---GGCGGAGCA-GCCCCga -5'
12842 5' -65.2 NC_003387.1 + 22170 0.69 0.155019
Target:  5'- -aCCGGCCGcggcgGCgGuCCaUGUCGGGGCg -3'
miRNA:   3'- uaGGCCGGC-----UGgC-GGaGCAGCCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.