miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12842 5' -65.2 NC_003387.1 + 51740 0.76 0.048921
Target:  5'- -cCCGGUCGAgCGCCUCGgCGGcGGCa -3'
miRNA:   3'- uaGGCCGGCUgGCGGAGCaGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 40366 0.67 0.205175
Target:  5'- gAUCgCGGCCGggGCCaaggGCCUCGacgUCGGcGGCg -3'
miRNA:   3'- -UAG-GCCGGC--UGG----CGGAGC---AGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 49485 0.69 0.167049
Target:  5'- uUUCGGCCGGugcgcCCGCCcggCGUCgacgugucgcaauGGGGCUg -3'
miRNA:   3'- uAGGCCGGCU-----GGCGGa--GCAG-------------CCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 31013 0.69 0.163228
Target:  5'- gAUCgGGCCGAgCGUg-CGcCGGGGCg -3'
miRNA:   3'- -UAGgCCGGCUgGCGgaGCaGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 6962 0.7 0.139714
Target:  5'- -cCCuGCUGGCCGcCCUCGUCGaGGGg- -3'
miRNA:   3'- uaGGcCGGCUGGC-GGAGCAGC-CCCga -5'
12842 5' -65.2 NC_003387.1 + 8521 0.7 0.139714
Target:  5'- cUCgGGCCGACCGgCUCG-CGGGuaGUUa -3'
miRNA:   3'- uAGgCCGGCUGGCgGAGCaGCCC--CGA- -5'
12842 5' -65.2 NC_003387.1 + 23890 0.66 0.262403
Target:  5'- -gCUGGCCGACgUGCUgcgCGccgaGGGGCUg -3'
miRNA:   3'- uaGGCCGGCUG-GCGGa--GCag--CCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 11678 0.66 0.250001
Target:  5'- gAUCgGGCUGAuuaUCGCCgcggUCGUCGGGcucGCUg -3'
miRNA:   3'- -UAGgCCGGCU---GGCGG----AGCAGCCC---CGA- -5'
12842 5' -65.2 NC_003387.1 + 32782 0.67 0.215683
Target:  5'- -cCCGGCCGcguACCGCCggGUCGaccuGGCg -3'
miRNA:   3'- uaGGCCGGC---UGGCGGagCAGCc---CCGa -5'
12842 5' -65.2 NC_003387.1 + 17738 0.67 0.200088
Target:  5'- -cCCGGCCgGGCCGCCa----GGGGCc -3'
miRNA:   3'- uaGGCCGG-CUGGCGGagcagCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 11481 0.69 0.163228
Target:  5'- uUCaUGGCCGACaauGCCUCGUgGGcGGUg -3'
miRNA:   3'- uAG-GCCGGCUGg--CGGAGCAgCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 32246 0.72 0.086645
Target:  5'- -gCUGGCCGACCGCCUggcCGUCGccgaGGCc -3'
miRNA:   3'- uaGGCCGGCUGGCGGA---GCAGCc---CCGa -5'
12842 5' -65.2 NC_003387.1 + 2922 0.66 0.238086
Target:  5'- -aCCGGCUGAUCGUgUCG-CGGuucGGCg -3'
miRNA:   3'- uaGGCCGGCUGGCGgAGCaGCC---CCGa -5'
12842 5' -65.2 NC_003387.1 + 34258 0.71 0.104513
Target:  5'- -aCCGGCUGAUCGCCgaGUCGGGcGUc -3'
miRNA:   3'- uaGGCCGGCUGGCGGagCAGCCC-CGa -5'
12842 5' -65.2 NC_003387.1 + 44642 0.68 0.190726
Target:  5'- -cCUGGCCG-CgGCCUCGgcgauccuggccgaGGGGCUg -3'
miRNA:   3'- uaGGCCGGCuGgCGGAGCag------------CCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 43465 0.66 0.238086
Target:  5'- -aCCGGCgGcgaCGUCcUGUCGGGGCg -3'
miRNA:   3'- uaGGCCGgCug-GCGGaGCAGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 23840 0.71 0.110225
Target:  5'- -cCCGcGCCuaaGCCGCCgcaGUCGGGGCc -3'
miRNA:   3'- uaGGC-CGGc--UGGCGGag-CAGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 10672 0.67 0.210373
Target:  5'- --gCGGCugcgaccaCGGCCGCCUCGgCGGuGGCc -3'
miRNA:   3'- uagGCCG--------GCUGGCGGAGCaGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 27920 0.69 0.159076
Target:  5'- -aCCGGCggcgUGGgCGCCUCGgggggggcucggUCGGGGCg -3'
miRNA:   3'- uaGGCCG----GCUgGCGGAGC------------AGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 11005 0.68 0.171387
Target:  5'- -cUCGGCCGugccccgGCCGCCuUCGUCGGcGCc -3'
miRNA:   3'- uaGGCCGGC-------UGGCGG-AGCAGCCcCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.