miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 5' -57.2 NC_003387.1 + 15519 1.09 0.000471
Target:  5'- uUUAUGAGCACCGCCUGCUGCACGCGCu -3'
miRNA:   3'- -AAUACUCGUGGCGGACGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 33423 0.84 0.036048
Target:  5'- gUUGUGcGGCugUGCCUGCUGCuGCGCGCc -3'
miRNA:   3'- -AAUAC-UCGugGCGGACGACG-UGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 8224 0.81 0.059556
Target:  5'- ---gGAGCGCaaCGCCgaucUGCUGCACGCGCu -3'
miRNA:   3'- aauaCUCGUG--GCGG----ACGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 34173 0.77 0.112607
Target:  5'- cUGUGGGCACaCGCCUGCgUGUuCGCGa -3'
miRNA:   3'- aAUACUCGUG-GCGGACG-ACGuGCGCg -5'
12843 5' -57.2 NC_003387.1 + 1129 0.76 0.122276
Target:  5'- ---aGGGCGCacggugugcucggCGCCUGCgUGCAUGCGCg -3'
miRNA:   3'- aauaCUCGUG-------------GCGGACG-ACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 41097 0.75 0.149282
Target:  5'- -cGUGA--GCCGCgaGCUGCugGCGCu -3'
miRNA:   3'- aaUACUcgUGGCGgaCGACGugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 14719 0.74 0.16225
Target:  5'- ---gGuGCACgGCUUGCUGCGguCGCGCa -3'
miRNA:   3'- aauaCuCGUGgCGGACGACGU--GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 26039 0.74 0.181113
Target:  5'- ---cGAGCAgCGCgaGCUGCACGaaaCGCa -3'
miRNA:   3'- aauaCUCGUgGCGgaCGACGUGC---GCG- -5'
12843 5' -57.2 NC_003387.1 + 10740 0.74 0.181113
Target:  5'- --uUGAGCACCGCg-GCgGCcuccGCGCGCa -3'
miRNA:   3'- aauACUCGUGGCGgaCGaCG----UGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 32180 0.74 0.181113
Target:  5'- ---cGAGCugACCGCCgaGCUGCGCGuCGUc -3'
miRNA:   3'- aauaCUCG--UGGCGGa-CGACGUGC-GCG- -5'
12843 5' -57.2 NC_003387.1 + 48093 0.73 0.196512
Target:  5'- -gGUG-GCGCUGCC-GCUGCGCcCGCg -3'
miRNA:   3'- aaUACuCGUGGCGGaCGACGUGcGCG- -5'
12843 5' -57.2 NC_003387.1 + 13933 0.73 0.201894
Target:  5'- -cAUGA-CGCCGCCgagGCUGUACaGCGUg -3'
miRNA:   3'- aaUACUcGUGGCGGa--CGACGUG-CGCG- -5'
12843 5' -57.2 NC_003387.1 + 12376 0.73 0.207403
Target:  5'- ---cGAuCACgGCCUGCUGCACG-GCu -3'
miRNA:   3'- aauaCUcGUGgCGGACGACGUGCgCG- -5'
12843 5' -57.2 NC_003387.1 + 13015 0.72 0.236303
Target:  5'- ---aGcAGCccgaucuGCCG-CUGCUGCACGCGCu -3'
miRNA:   3'- aauaC-UCG-------UGGCgGACGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 32213 0.72 0.236926
Target:  5'- ---cGAGCGCgaCGCCgcGCUGCGCgaGCGCg -3'
miRNA:   3'- aauaCUCGUG--GCGGa-CGACGUG--CGCG- -5'
12843 5' -57.2 NC_003387.1 + 36898 0.72 0.255615
Target:  5'- ----cAGCAUCGCCUcggugacGCUGUGCGCGUa -3'
miRNA:   3'- aauacUCGUGGCGGA-------CGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 33385 0.72 0.25628
Target:  5'- -gAUGGGaCGCCGCCgcagGCacauuCACGCGCg -3'
miRNA:   3'- aaUACUC-GUGGCGGa---CGac---GUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 48115 0.72 0.25628
Target:  5'- --uUGGcCGCCuugGCUUGCUGCGCGCGUu -3'
miRNA:   3'- aauACUcGUGG---CGGACGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 6525 0.71 0.26989
Target:  5'- -gGUGGGCACCugacacCCUGCUGucguccCugGCGCu -3'
miRNA:   3'- aaUACUCGUGGc-----GGACGAC------GugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 41267 0.71 0.26989
Target:  5'- --uUGAGCGCCccggcgGCgaGCUGCA-GCGCg -3'
miRNA:   3'- aauACUCGUGG------CGgaCGACGUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.