miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 5' -57.2 NC_003387.1 + 259 0.68 0.437905
Target:  5'- ---cGuGCAgUGCCcugGCUGCGcCGCGCc -3'
miRNA:   3'- aauaCuCGUgGCGGa--CGACGU-GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 1129 0.76 0.122276
Target:  5'- ---aGGGCGCacggugugcucggCGCCUGCgUGCAUGCGCg -3'
miRNA:   3'- aauaCUCGUG-------------GCGGACG-ACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 1544 0.66 0.563183
Target:  5'- ---cGAGgAUCGCCagGC-GUACGUGCa -3'
miRNA:   3'- aauaCUCgUGGCGGa-CGaCGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 1757 0.68 0.428172
Target:  5'- -cAUGAGC-CCGgCgGCggcGCugGCGCc -3'
miRNA:   3'- aaUACUCGuGGCgGaCGa--CGugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 3143 0.66 0.530637
Target:  5'- ---aGGcCACCGCCcgGCaGCGgGCGCa -3'
miRNA:   3'- aauaCUcGUGGCGGa-CGaCGUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 3327 0.69 0.346682
Target:  5'- -----cGCAuCCGCCUGCgcaGCGUGCGCa -3'
miRNA:   3'- aauacuCGU-GGCGGACGa--CGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 3558 0.69 0.381497
Target:  5'- --cUGcGCgACCGCCUGCgcGCugGUGUg -3'
miRNA:   3'- aauACuCG-UGGCGGACGa-CGugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 3936 0.67 0.498801
Target:  5'- -gGUGGGCGCUG-CUGCagaacgacccggUGguCGCGCu -3'
miRNA:   3'- aaUACUCGUGGCgGACG------------ACguGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 4543 0.69 0.346682
Target:  5'- ---cGGGCACCuugcggGCCUGCgccUGCGCgaccGCGCg -3'
miRNA:   3'- aauaCUCGUGG------CGGACG---ACGUG----CGCG- -5'
12843 5' -57.2 NC_003387.1 + 4916 0.67 0.457745
Target:  5'- gUAgcuGCACUGCCcgGCgcgGCGuCGCGCg -3'
miRNA:   3'- aAUacuCGUGGCGGa-CGa--CGU-GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 6109 0.66 0.563183
Target:  5'- -cAUGGGCACCaagaccacgcaCCUGCcggUGCugGCGa -3'
miRNA:   3'- aaUACUCGUGGc----------GGACG---ACGugCGCg -5'
12843 5' -57.2 NC_003387.1 + 6434 0.67 0.478056
Target:  5'- -----uGCGCCGCCUGCUcggccuccCACGUGUc -3'
miRNA:   3'- aauacuCGUGGCGGACGAc-------GUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 6525 0.71 0.26989
Target:  5'- -gGUGGGCACCugacacCCUGCUGucguccCugGCGCu -3'
miRNA:   3'- aaUACUCGUGGc-----GGACGAC------GugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 7374 0.69 0.345842
Target:  5'- ---cGAGCGCguCGCCUgaGCUGCACGgaucggcCGCg -3'
miRNA:   3'- aauaCUCGUG--GCGGA--CGACGUGC-------GCG- -5'
12843 5' -57.2 NC_003387.1 + 8224 0.81 0.059556
Target:  5'- ---gGAGCGCaaCGCCgaucUGCUGCACGCGCu -3'
miRNA:   3'- aauaCUCGUG--GCGG----ACGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 9806 0.67 0.478056
Target:  5'- ---cGAGCgACCGgC-GCUGCAggcUGCGCa -3'
miRNA:   3'- aauaCUCG-UGGCgGaCGACGU---GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 10645 0.66 0.552267
Target:  5'- ---cGGGCACCc---GCaGCACGCGCg -3'
miRNA:   3'- aauaCUCGUGGcggaCGaCGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 10740 0.74 0.181113
Target:  5'- --uUGAGCACCGCg-GCgGCcuccGCGCGCa -3'
miRNA:   3'- aauACUCGUGGCGgaCGaCG----UGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 12376 0.73 0.207403
Target:  5'- ---cGAuCACgGCCUGCUGCACG-GCu -3'
miRNA:   3'- aauaCUcGUGgCGGACGACGUGCgCG- -5'
12843 5' -57.2 NC_003387.1 + 12440 0.68 0.399758
Target:  5'- ---aGGGCGCUGCCgagGUUcGCugGCGg -3'
miRNA:   3'- aauaCUCGUGGCGGa--CGA-CGugCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.