miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 5' -57.2 NC_003387.1 + 33423 0.84 0.036048
Target:  5'- gUUGUGcGGCugUGCCUGCUGCuGCGCGCc -3'
miRNA:   3'- -AAUAC-UCGugGCGGACGACG-UGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 49033 0.7 0.338341
Target:  5'- --cUGAGCaucACCGgCUcgacgguugcGCUGCugGCGCu -3'
miRNA:   3'- aauACUCG---UGGCgGA----------CGACGugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 24100 0.69 0.346682
Target:  5'- -gGUGucGGCAUCGCCUGgcaUGCGgGCGUc -3'
miRNA:   3'- aaUAC--UCGUGGCGGACg--ACGUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 45772 0.66 0.563183
Target:  5'- cUGUG-GCGCCuGCCcgccGCUGCGCaggcCGCg -3'
miRNA:   3'- aAUACuCGUGG-CGGa---CGACGUGc---GCG- -5'
12843 5' -57.2 NC_003387.1 + 32180 0.74 0.181113
Target:  5'- ---cGAGCugACCGCCgaGCUGCGCGuCGUc -3'
miRNA:   3'- aauaCUCG--UGGCGGa-CGACGUGC-GCG- -5'
12843 5' -57.2 NC_003387.1 + 48093 0.73 0.196512
Target:  5'- -gGUG-GCGCUGCC-GCUGCGCcCGCg -3'
miRNA:   3'- aaUACuCGUGGCGGaCGACGUGcGCG- -5'
12843 5' -57.2 NC_003387.1 + 33385 0.72 0.25628
Target:  5'- -gAUGGGaCGCCGCCgcagGCacauuCACGCGCg -3'
miRNA:   3'- aaUACUC-GUGGCGGa---CGac---GUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 6525 0.71 0.26989
Target:  5'- -gGUGGGCACCugacacCCUGCUGucguccCugGCGCu -3'
miRNA:   3'- aaUACUCGUGGc-----GGACGAC------GugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 49382 0.71 0.276911
Target:  5'- --uUGAGCACCaCaCUGC-GCACGCuGCg -3'
miRNA:   3'- aauACUCGUGGcG-GACGaCGUGCG-CG- -5'
12843 5' -57.2 NC_003387.1 + 40491 0.7 0.330147
Target:  5'- ---cGAGCGCCG-CUGC-GCugGCGa -3'
miRNA:   3'- aauaCUCGUGGCgGACGaCGugCGCg -5'
12843 5' -57.2 NC_003387.1 + 31624 0.7 0.322101
Target:  5'- -cGUGAccGCACCGCCcugGCUaaGCGCGUc -3'
miRNA:   3'- aaUACU--CGUGGCGGa--CGAcgUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 13155 0.71 0.26989
Target:  5'- ---cGAGCACCGCgUGCagaagGCcgaGCGCg -3'
miRNA:   3'- aauaCUCGUGGCGgACGa----CGug-CGCG- -5'
12843 5' -57.2 NC_003387.1 + 8224 0.81 0.059556
Target:  5'- ---gGAGCGCaaCGCCgaucUGCUGCACGCGCu -3'
miRNA:   3'- aauaCUCGUG--GCGG----ACGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 47744 0.7 0.330147
Target:  5'- -----cGCgACCGaCCUGCUGCGCGaGCa -3'
miRNA:   3'- aauacuCG-UGGC-GGACGACGUGCgCG- -5'
12843 5' -57.2 NC_003387.1 + 34173 0.77 0.112607
Target:  5'- cUGUGGGCACaCGCCUGCgUGUuCGCGa -3'
miRNA:   3'- aAUACUCGUG-GCGGACG-ACGuGCGCg -5'
12843 5' -57.2 NC_003387.1 + 30365 0.71 0.26989
Target:  5'- ---cGAGUcgACCGCCUGCaGCucgcUGCGCa -3'
miRNA:   3'- aauaCUCG--UGGCGGACGaCGu---GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 47900 0.7 0.330147
Target:  5'- -gAUuAGCACgaGCUUGC-GCACGCGCu -3'
miRNA:   3'- aaUAcUCGUGg-CGGACGaCGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 30557 0.7 0.338341
Target:  5'- ---gGAcCGCCGCCgcgGCcgGUACGCGCc -3'
miRNA:   3'- aauaCUcGUGGCGGa--CGa-CGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 41097 0.75 0.149282
Target:  5'- -cGUGA--GCCGCgaGCUGCugGCGCu -3'
miRNA:   3'- aaUACUcgUGGCGgaCGACGugCGCG- -5'
12843 5' -57.2 NC_003387.1 + 32213 0.72 0.236926
Target:  5'- ---cGAGCGCgaCGCCgcGCUGCGCgaGCGCg -3'
miRNA:   3'- aauaCUCGUG--GCGGa-CGACGUG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.