miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 5' -49.5 NC_003387.1 + 134 0.66 0.959215
Target:  5'- cGGUCGCCcUCGCGAUc--------- -3'
miRNA:   3'- aCCAGCGGuAGCGCUGcaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 24501 0.66 0.959214
Target:  5'- cGGUCgaGCCGUCGCGGCu--------- -3'
miRNA:   3'- aCCAG--CGGUAGCGCUGcaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 34347 0.66 0.955
Target:  5'- aGGaUGCCGUCGUuguagagguuGACGUUGAu---- -3'
miRNA:   3'- aCCaGCGGUAGCG----------CUGCAACUuuuac -5'
12844 5' -49.5 NC_003387.1 + 50878 0.66 0.955
Target:  5'- gGGUCGCCcuugagaacGUCGgGGCGUcGAc---- -3'
miRNA:   3'- aCCAGCGG---------UAGCgCUGCAaCUuuuac -5'
12844 5' -49.5 NC_003387.1 + 11069 0.66 0.9505
Target:  5'- aGGUCGCaGUCGuCGACGUa------- -3'
miRNA:   3'- aCCAGCGgUAGC-GCUGCAacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 51546 0.66 0.9505
Target:  5'- -uGUCGuCCAUCGCGuucuCGgUGAGGAUc -3'
miRNA:   3'- acCAGC-GGUAGCGCu---GCaACUUUUAc -5'
12844 5' -49.5 NC_003387.1 + 35150 0.66 0.9505
Target:  5'- aGGUCGaCCAgCGgGGCGUUGu----- -3'
miRNA:   3'- aCCAGC-GGUaGCgCUGCAACuuuuac -5'
12844 5' -49.5 NC_003387.1 + 6663 0.66 0.9505
Target:  5'- gGGaCGCCGaCGCGGCGaucGAGGUGa -3'
miRNA:   3'- aCCaGCGGUaGCGCUGCaacUUUUAC- -5'
12844 5' -49.5 NC_003387.1 + 10610 0.66 0.947661
Target:  5'- cGGUCGCCucgGUCaugcaggacgcgaccGCGGCGgUGAAGGg- -3'
miRNA:   3'- aCCAGCGG---UAG---------------CGCUGCaACUUUUac -5'
12844 5' -49.5 NC_003387.1 + 11845 0.66 0.945709
Target:  5'- aGGcCGCCugggacaugAUCGCGGCGggGGccAUGu -3'
miRNA:   3'- aCCaGCGG---------UAGCGCUGCaaCUuuUAC- -5'
12844 5' -49.5 NC_003387.1 + 15254 0.66 0.945709
Target:  5'- cGGUCGCCGccgagaagUCGguCGACGccgaGGAGAUGu -3'
miRNA:   3'- aCCAGCGGU--------AGC--GCUGCaa--CUUUUAC- -5'
12844 5' -49.5 NC_003387.1 + 29446 0.66 0.945709
Target:  5'- cGGUCGCUAuccUCGCGAUc--GAGAAc- -3'
miRNA:   3'- aCCAGCGGU---AGCGCUGcaaCUUUUac -5'
12844 5' -49.5 NC_003387.1 + 17173 0.66 0.945709
Target:  5'- cUGGUgCGCCGccugggCgGCGACGgcgcGAAAGUGg -3'
miRNA:   3'- -ACCA-GCGGUa-----G-CGCUGCaa--CUUUUAC- -5'
12844 5' -49.5 NC_003387.1 + 33991 0.67 0.93524
Target:  5'- gGGUCGCgGUCGaCGACGa-------- -3'
miRNA:   3'- aCCAGCGgUAGC-GCUGCaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 27521 0.67 0.929557
Target:  5'- cGGcCGCCGcCGCGAgGUUGccuguAUGa -3'
miRNA:   3'- aCCaGCGGUaGCGCUgCAACuuu--UAC- -5'
12844 5' -49.5 NC_003387.1 + 34512 0.67 0.929556
Target:  5'- aGGUCGCCGgucgUCGCGuCGccGAGGc-- -3'
miRNA:   3'- aCCAGCGGU----AGCGCuGCaaCUUUuac -5'
12844 5' -49.5 NC_003387.1 + 10518 0.67 0.923572
Target:  5'- cGGUCGCCGuccugcUCGCGcacgcccgccuCGUUGAGGc-- -3'
miRNA:   3'- aCCAGCGGU------AGCGCu----------GCAACUUUuac -5'
12844 5' -49.5 NC_003387.1 + 12232 0.67 0.917287
Target:  5'- cGGUCGCCAgcgcaGCGGCGcucggcUUGAu---- -3'
miRNA:   3'- aCCAGCGGUag---CGCUGC------AACUuuuac -5'
12844 5' -49.5 NC_003387.1 + 48396 0.68 0.881423
Target:  5'- cUGGUgCGCCuUCuCGGCGUUGAGc--- -3'
miRNA:   3'- -ACCA-GCGGuAGcGCUGCAACUUuuac -5'
12844 5' -49.5 NC_003387.1 + 26490 0.69 0.865089
Target:  5'- cGGcgaUCGCCGggGCGACGcUGuGAAUGa -3'
miRNA:   3'- aCC---AGCGGUagCGCUGCaACuUUUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.