miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12846 3' -52.9 NC_003387.1 + 31064 0.66 0.839865
Target:  5'- --cACGuGCUCGGccGCCGcCGCGGuCGACg -3'
miRNA:   3'- acaUGC-CGAGUC--UGGU-GUGCUuGCUG- -5'
12846 3' -52.9 NC_003387.1 + 16285 0.66 0.839865
Target:  5'- --aGCuGCUCGcGCguCACGAACGGCa -3'
miRNA:   3'- acaUGcCGAGUcUGguGUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 18202 0.66 0.839865
Target:  5'- gGUGCGcCUCGG-CgACGCG-ACGACc -3'
miRNA:   3'- aCAUGCcGAGUCuGgUGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 5207 0.66 0.839865
Target:  5'- cUGUgGCGcCUCGGguACCGCACGAugcugcuCGACa -3'
miRNA:   3'- -ACA-UGCcGAGUC--UGGUGUGCUu------GCUG- -5'
12846 3' -52.9 NC_003387.1 + 46361 0.66 0.838969
Target:  5'- --cGCGGCcgAGGCCaagcgcgACACGGugGGCg -3'
miRNA:   3'- acaUGCCGagUCUGG-------UGUGCUugCUG- -5'
12846 3' -52.9 NC_003387.1 + 27450 0.66 0.830808
Target:  5'- --gACGGgUC-GAgCGCACGcGCGACg -3'
miRNA:   3'- acaUGCCgAGuCUgGUGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 25427 0.66 0.830808
Target:  5'- --cGCGGCUCucaaGGGCCGCcaguGCGGCg -3'
miRNA:   3'- acaUGCCGAG----UCUGGUGugcuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 48273 0.66 0.830808
Target:  5'- gGU-CGGCUCGG-CCuucgGCGCGGGCucGGCg -3'
miRNA:   3'- aCAuGCCGAGUCuGG----UGUGCUUG--CUG- -5'
12846 3' -52.9 NC_003387.1 + 34225 0.66 0.830808
Target:  5'- gGUGCccGGCUCAaGCgGCACGAccgugcgguAUGACu -3'
miRNA:   3'- aCAUG--CCGAGUcUGgUGUGCU---------UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 23679 0.66 0.82989
Target:  5'- --cGCGGCUCAaggcGGCCggauacaACGCGAGCaACg -3'
miRNA:   3'- acaUGCCGAGU----CUGG-------UGUGCUUGcUG- -5'
12846 3' -52.9 NC_003387.1 + 10812 0.66 0.821534
Target:  5'- gGUGCagGGCUCGGGCaAgGCG-AUGACg -3'
miRNA:   3'- aCAUG--CCGAGUCUGgUgUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 11639 0.66 0.821534
Target:  5'- --cGCGGCUCAcGAUCGCcccuCGAucgcguCGACa -3'
miRNA:   3'- acaUGCCGAGU-CUGGUGu---GCUu-----GCUG- -5'
12846 3' -52.9 NC_003387.1 + 31018 0.66 0.821534
Target:  5'- gGU-CGGCgCGGGCCGCGCucgccgaGGCGGCc -3'
miRNA:   3'- aCAuGCCGaGUCUGGUGUGc------UUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 10012 0.66 0.821534
Target:  5'- --cGCGGC-CGGGCgACgACG-ACGACg -3'
miRNA:   3'- acaUGCCGaGUCUGgUG-UGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 29613 0.66 0.820595
Target:  5'- aUGU-CGGguaUCAGucggugcACCGCACGcGCGACg -3'
miRNA:   3'- -ACAuGCCg--AGUC-------UGGUGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 25467 0.66 0.802377
Target:  5'- cGUcGCGGCUCAuGCgGCGCauccugucGGGCGACc -3'
miRNA:   3'- aCA-UGCCGAGUcUGgUGUG--------CUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 7332 0.66 0.802377
Target:  5'- ---uCGGCUCGGGCgGC-CGGGCG-Ca -3'
miRNA:   3'- acauGCCGAGUCUGgUGuGCUUGCuG- -5'
12846 3' -52.9 NC_003387.1 + 51330 0.66 0.802377
Target:  5'- gGUGCGgguaGCUCGGauucaucuugcGCCACuGCGAGCGGu -3'
miRNA:   3'- aCAUGC----CGAGUC-----------UGGUG-UGCUUGCUg -5'
12846 3' -52.9 NC_003387.1 + 40350 0.67 0.792515
Target:  5'- --aGCGGCagauugCGGGCCGuCGCG-GCGGCg -3'
miRNA:   3'- acaUGCCGa-----GUCUGGU-GUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 10424 0.67 0.782479
Target:  5'- aGUACGGCUCGcGGCUgucgGCGgGcauCGACa -3'
miRNA:   3'- aCAUGCCGAGU-CUGG----UGUgCuu-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.