miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12846 3' -52.9 NC_003387.1 + 22103 0.69 0.641635
Target:  5'- cGUACGGCgccauccccggCGGcCCugGCGGcaauACGACg -3'
miRNA:   3'- aCAUGCCGa----------GUCuGGugUGCU----UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 1956 0.69 0.652843
Target:  5'- gGUugGGgCUgGGACCGCcGCGAccCGACc -3'
miRNA:   3'- aCAugCC-GAgUCUGGUG-UGCUu-GCUG- -5'
12846 3' -52.9 NC_003387.1 + 10651 0.69 0.652843
Target:  5'- gGUACGGCguUCGG-CCucgACGCGGcuGCGACc -3'
miRNA:   3'- aCAUGCCG--AGUCuGG---UGUGCU--UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 29717 0.69 0.674075
Target:  5'- --gGCGGCgccCAGGCCgacgacggcagcuACGCGGGCGAg -3'
miRNA:   3'- acaUGCCGa--GUCUGG-------------UGUGCUUGCUg -5'
12846 3' -52.9 NC_003387.1 + 23938 0.69 0.675189
Target:  5'- cGgcUGGCUC-GACCgggGCACG-GCGACa -3'
miRNA:   3'- aCauGCCGAGuCUGG---UGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 40268 0.69 0.675189
Target:  5'- --cGCGGC-CAGGCCGCcgccaGCGAAccuCGGCa -3'
miRNA:   3'- acaUGCCGaGUCUGGUG-----UGCUU---GCUG- -5'
12846 3' -52.9 NC_003387.1 + 41110 0.69 0.675189
Target:  5'- gGUcGCGGCcuUCGugaugcccGACCACACGGccaucGCGACg -3'
miRNA:   3'- aCA-UGCCG--AGU--------CUGGUGUGCU-----UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 38280 0.68 0.686304
Target:  5'- -aUAUGGUUCAucCCGCGCG-GCGGCa -3'
miRNA:   3'- acAUGCCGAGUcuGGUGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 1887 0.68 0.697365
Target:  5'- --cAUGGCgaUCAGcCCGCGCuGAAUGACg -3'
miRNA:   3'- acaUGCCG--AGUCuGGUGUG-CUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 29535 0.68 0.697365
Target:  5'- --aACGGCaaggUC-GACCggGCAUGAGCGACg -3'
miRNA:   3'- acaUGCCG----AGuCUGG--UGUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 45818 0.68 0.697365
Target:  5'- aUGUcccGCGGCUgAuGGCC-CGCG-ACGACg -3'
miRNA:   3'- -ACA---UGCCGAgU-CUGGuGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 8363 0.68 0.708361
Target:  5'- cUGUuCGGCaugCAGGCCGCGguguucUGGACGAUc -3'
miRNA:   3'- -ACAuGCCGa--GUCUGGUGU------GCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 5521 0.68 0.708361
Target:  5'- --aGCGGCUC--GCC-CGCGAGCGGg -3'
miRNA:   3'- acaUGCCGAGucUGGuGUGCUUGCUg -5'
12846 3' -52.9 NC_003387.1 + 20207 0.68 0.708361
Target:  5'- --cACGGC-CGGGCgUGCACGcAGCGGCa -3'
miRNA:   3'- acaUGCCGaGUCUG-GUGUGC-UUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 38621 0.68 0.719279
Target:  5'- cUGUuCGGCccgCAGGCCGCGCuGGCGcuGCa -3'
miRNA:   3'- -ACAuGCCGa--GUCUGGUGUGcUUGC--UG- -5'
12846 3' -52.9 NC_003387.1 + 727 0.68 0.739766
Target:  5'- gUGUcgACGGCcuggccgUCGGugCGCGCGAcguguggcGCGAUg -3'
miRNA:   3'- -ACA--UGCCG-------AGUCugGUGUGCU--------UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 42370 0.68 0.740834
Target:  5'- cGUGCGGaucaugugCGGGCUGCGC-AACGGCu -3'
miRNA:   3'- aCAUGCCga------GUCUGGUGUGcUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 52491 0.68 0.740834
Target:  5'- uUGggGCGGCUCAccgcaagugcaACCGCGacaaGAGCGACa -3'
miRNA:   3'- -ACa-UGCCGAGUc----------UGGUGUg---CUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 8401 0.68 0.74403
Target:  5'- cGUGCGGUgucggggccucgcCGGugCGCGCGAgguaaucgagagacACGGCg -3'
miRNA:   3'- aCAUGCCGa------------GUCugGUGUGCU--------------UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 22963 0.68 0.745093
Target:  5'- cGUGgGGCgccccggucaucgugUCGGGCgGCGCcGACGACg -3'
miRNA:   3'- aCAUgCCG---------------AGUCUGgUGUGcUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.