miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 3' -56.3 NC_003387.1 + 44610 0.66 0.635402
Target:  5'- --aGCGCGU-ACGAGC-UgGGCUCGCc -3'
miRNA:   3'- aagUGUGCAcUGCUCGuGgCCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 41552 0.66 0.635402
Target:  5'- -cUACAUGgagGGCGAGCACCugucGCUCu- -3'
miRNA:   3'- aaGUGUGCa--CUGCUCGUGGc---CGAGug -5'
12853 3' -56.3 NC_003387.1 + 30766 0.66 0.635402
Target:  5'- gUCGgGCGUGAcCGuGUACU-GCUCGCg -3'
miRNA:   3'- aAGUgUGCACU-GCuCGUGGcCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 46981 0.66 0.624296
Target:  5'- -aCAUGCGggcgacgacGACGAGCGCgGGC-CGCc -3'
miRNA:   3'- aaGUGUGCa--------CUGCUCGUGgCCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 9022 0.66 0.624296
Target:  5'- --aGCACcUGGCGGGCGCCgucGGCgaucCACg -3'
miRNA:   3'- aagUGUGcACUGCUCGUGG---CCGa---GUG- -5'
12853 3' -56.3 NC_003387.1 + 9055 0.66 0.624296
Target:  5'- aUCGCGCagaaGGCGGGC-CUGGCUgACc -3'
miRNA:   3'- aAGUGUGca--CUGCUCGuGGCCGAgUG- -5'
12853 3' -56.3 NC_003387.1 + 37264 0.66 0.624296
Target:  5'- gUCGgccCGCGUGGCGgucaaGGCGCCuGGCgCGCu -3'
miRNA:   3'- aAGU---GUGCACUGC-----UCGUGG-CCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 42200 0.66 0.624296
Target:  5'- -gCGgGCGUGcGCGAGCaggacggcgACCGGCgCACc -3'
miRNA:   3'- aaGUgUGCAC-UGCUCG---------UGGCCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 28200 0.66 0.624296
Target:  5'- cUCGCcaAgGUGGCGgaacgGGCugCGGCUgACg -3'
miRNA:   3'- aAGUG--UgCACUGC-----UCGugGCCGAgUG- -5'
12853 3' -56.3 NC_003387.1 + 14912 0.66 0.623186
Target:  5'- -gCACgACGUGACGgcugcgcGGCuACCGGCgcagcggCGCa -3'
miRNA:   3'- aaGUG-UGCACUGC-------UCG-UGGCCGa------GUG- -5'
12853 3' -56.3 NC_003387.1 + 23099 0.66 0.613198
Target:  5'- gUCGCGCGUG-CGGuGCACCGaCUgAUa -3'
miRNA:   3'- aAGUGUGCACuGCU-CGUGGCcGAgUG- -5'
12853 3' -56.3 NC_003387.1 + 3756 0.66 0.602116
Target:  5'- -gCcCGCGUGcACGAuCGCCaGCUCACg -3'
miRNA:   3'- aaGuGUGCAC-UGCUcGUGGcCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 39654 0.66 0.602116
Target:  5'- gUCGCGCaUGGCguggGAGCAgCaGCUCGCg -3'
miRNA:   3'- aAGUGUGcACUG----CUCGUgGcCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 33139 0.66 0.591061
Target:  5'- -cCACACGUcGAcgcCGAGCA--GGCUCGCc -3'
miRNA:   3'- aaGUGUGCA-CU---GCUCGUggCCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 20203 0.66 0.580041
Target:  5'- cUCGCACGgccgGGCGuGCACgcagCGGCagucgUCGCa -3'
miRNA:   3'- aAGUGUGCa---CUGCuCGUG----GCCG-----AGUG- -5'
12853 3' -56.3 NC_003387.1 + 8027 0.67 0.566876
Target:  5'- gUCACcgacgcgGCGaucgagaacucuuUGGCGAGCACCGGCa--- -3'
miRNA:   3'- aAGUG-------UGC-------------ACUGCUCGUGGCCGagug -5'
12853 3' -56.3 NC_003387.1 + 4069 0.67 0.558141
Target:  5'- gUCACgGCGUG-CGGGUucuGCCGcauGCUCGCg -3'
miRNA:   3'- aAGUG-UGCACuGCUCG---UGGC---CGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 49426 0.67 0.546195
Target:  5'- --gGCGCGUGAacgucgcCGAGCAguacCCGGCacgCACa -3'
miRNA:   3'- aagUGUGCACU-------GCUCGU----GGCCGa--GUG- -5'
12853 3' -56.3 NC_003387.1 + 10240 0.67 0.535406
Target:  5'- --gACGCGaUGAgccgcgcCGAGCGCgGGCUCAa -3'
miRNA:   3'- aagUGUGC-ACU-------GCUCGUGgCCGAGUg -5'
12853 3' -56.3 NC_003387.1 + 34139 0.68 0.515122
Target:  5'- --uGCGCGaacucGACGAGCACCagGGCgUCGCc -3'
miRNA:   3'- aagUGUGCa----CUGCUCGUGG--CCG-AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.