miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 3' -56.3 NC_003387.1 + 50540 0.68 0.463367
Target:  5'- -cCACAUGUcGGCGAccaagGCGCCGagcuGCUCGCg -3'
miRNA:   3'- aaGUGUGCA-CUGCU-----CGUGGC----CGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 49426 0.67 0.546195
Target:  5'- --gGCGCGUGAacgucgcCGAGCAguacCCGGCacgCACa -3'
miRNA:   3'- aagUGUGCACU-------GCUCGU----GGCCGa--GUG- -5'
12853 3' -56.3 NC_003387.1 + 46981 0.66 0.624296
Target:  5'- -aCAUGCGggcgacgacGACGAGCGCgGGC-CGCc -3'
miRNA:   3'- aaGUGUGCa--------CUGCUCGUGgCCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 44610 0.66 0.635402
Target:  5'- --aGCGCGU-ACGAGC-UgGGCUCGCc -3'
miRNA:   3'- aagUGUGCAcUGCUCGuGgCCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 44476 0.74 0.228445
Target:  5'- -aCGCccGCGUGACGGGUGaccguaaCGGCUCACg -3'
miRNA:   3'- aaGUG--UGCACUGCUCGUg------GCCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 43086 0.72 0.288453
Target:  5'- -gCACACcaggGUGACGGGCGCCGGgUacgaGCg -3'
miRNA:   3'- aaGUGUG----CACUGCUCGUGGCCgAg---UG- -5'
12853 3' -56.3 NC_003387.1 + 42200 0.66 0.624296
Target:  5'- -gCGgGCGUGcGCGAGCaggacggcgACCGGCgCACc -3'
miRNA:   3'- aaGUgUGCAC-UGCUCG---------UGGCCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 42080 0.73 0.240799
Target:  5'- -gCGCGCGUGcuGCGGGUGCCcGGCUCGu -3'
miRNA:   3'- aaGUGUGCAC--UGCUCGUGG-CCGAGUg -5'
12853 3' -56.3 NC_003387.1 + 41552 0.66 0.635402
Target:  5'- -cUACAUGgagGGCGAGCACCugucGCUCu- -3'
miRNA:   3'- aaGUGUGCa--CUGCUCGUGGc---CGAGug -5'
12853 3' -56.3 NC_003387.1 + 39654 0.66 0.602116
Target:  5'- gUCGCGCaUGGCguggGAGCAgCaGCUCGCg -3'
miRNA:   3'- aAGUGUGcACUG----CUCGUgGcCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 39306 0.69 0.453342
Target:  5'- gUUCACACc-GGCGAGCGCCGaCUUAa -3'
miRNA:   3'- -AAGUGUGcaCUGCUCGUGGCcGAGUg -5'
12853 3' -56.3 NC_003387.1 + 37264 0.66 0.624296
Target:  5'- gUCGgccCGCGUGGCGgucaaGGCGCCuGGCgCGCu -3'
miRNA:   3'- aAGU---GUGCACUGC-----UCGUGG-CCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 34139 0.68 0.515122
Target:  5'- --uGCGCGaacucGACGAGCACCagGGCgUCGCc -3'
miRNA:   3'- aagUGUGCa----CUGCUCGUGG--CCG-AGUG- -5'
12853 3' -56.3 NC_003387.1 + 33139 0.66 0.591061
Target:  5'- -cCACACGUcGAcgcCGAGCA--GGCUCGCc -3'
miRNA:   3'- aaGUGUGCA-CU---GCUCGUggCCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 32372 0.68 0.483759
Target:  5'- -cCGCACGaGGCGGGgGCUGGCcgaCACa -3'
miRNA:   3'- aaGUGUGCaCUGCUCgUGGCCGa--GUG- -5'
12853 3' -56.3 NC_003387.1 + 32288 0.69 0.443435
Target:  5'- --gGgGCGcGAgGAGCACCGGCggcugCACa -3'
miRNA:   3'- aagUgUGCaCUgCUCGUGGCCGa----GUG- -5'
12853 3' -56.3 NC_003387.1 + 30766 0.66 0.635402
Target:  5'- gUCGgGCGUGAcCGuGUACU-GCUCGCg -3'
miRNA:   3'- aAGUgUGCACU-GCuCGUGGcCGAGUG- -5'
12853 3' -56.3 NC_003387.1 + 28773 0.7 0.359312
Target:  5'- -gCGCACGUGcugcagcAUGGGCACUGGCaCACc -3'
miRNA:   3'- aaGUGUGCAC-------UGCUCGUGGCCGaGUG- -5'
12853 3' -56.3 NC_003387.1 + 28200 0.66 0.624296
Target:  5'- cUCGCcaAgGUGGCGgaacgGGCugCGGCUgACg -3'
miRNA:   3'- aAGUG--UgCACUGC-----UCGugGCCGAgUG- -5'
12853 3' -56.3 NC_003387.1 + 23099 0.66 0.613198
Target:  5'- gUCGCGCGUG-CGGuGCACCGaCUgAUa -3'
miRNA:   3'- aAGUGUGCACuGCU-CGUGGCcGAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.