miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 34975 0.73 0.135175
Target:  5'- -cGCGGGCCuGGUGCCCGuCGGCAaGCc -3'
miRNA:   3'- caUGCUCGGcCCGUGGGC-GUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 18947 0.73 0.13886
Target:  5'- -cACcAGCCGGGCcaaacGCUCGCGGCGcCGCc -3'
miRNA:   3'- caUGcUCGGCCCG-----UGGGCGUCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 7483 0.73 0.13886
Target:  5'- --cCGAGCCGcGCACCCGCAcccGCugGg -3'
miRNA:   3'- cauGCUCGGCcCGUGGGCGU---CGugCg -5'
12853 5' -60.9 NC_003387.1 + 2937 0.73 0.142638
Target:  5'- -cGCGGuUCGGcGCcaACCCGCAGCGCGUg -3'
miRNA:   3'- caUGCUcGGCC-CG--UGGGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 39093 0.73 0.150076
Target:  5'- -gACGguGGCCGGGUugaacucACCCGguGCcaGCGCg -3'
miRNA:   3'- caUGC--UCGGCCCG-------UGGGCguCG--UGCG- -5'
12853 5' -60.9 NC_003387.1 + 18508 0.73 0.150477
Target:  5'- --uUGAGCCGGGCACCgaccgcgaCGUGGCGCuGUg -3'
miRNA:   3'- cauGCUCGGCCCGUGG--------GCGUCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 1720 0.73 0.150477
Target:  5'- -aGCGGGCCGGGCGgcgcauCCCGguGCugauCGa -3'
miRNA:   3'- caUGCUCGGCCCGU------GGGCguCGu---GCg -5'
12853 5' -60.9 NC_003387.1 + 23748 0.72 0.158706
Target:  5'- -aGCG-GUCGGGCGuCCCGCAG-GCGUa -3'
miRNA:   3'- caUGCuCGGCCCGU-GGGCGUCgUGCG- -5'
12853 5' -60.9 NC_003387.1 + 29614 0.72 0.162971
Target:  5'- gGU-CGcGCCGGGCGCCaGCGGCuuGCc -3'
miRNA:   3'- -CAuGCuCGGCCCGUGGgCGUCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 4620 0.72 0.167339
Target:  5'- -gGCGAGCCaccgcGGGCGCa-GCGGCAgCGCc -3'
miRNA:   3'- caUGCUCGG-----CCCGUGggCGUCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 35807 0.72 0.171811
Target:  5'- -gGCGccccauguugucGGCCGGGUA-CUGCAGCGCGUc -3'
miRNA:   3'- caUGC------------UCGGCCCGUgGGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 6958 0.71 0.181077
Target:  5'- -gGCGGGCa-GGCGCCa-CAGCGCGCc -3'
miRNA:   3'- caUGCUCGgcCCGUGGgcGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 37183 0.71 0.185874
Target:  5'- -gGCG-GCCcGGCACCCcgagcgcguGCAGCAgGCg -3'
miRNA:   3'- caUGCuCGGcCCGUGGG---------CGUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 18475 0.71 0.190783
Target:  5'- -gGCGAucaGCCGGucgaGCGCCCcgagggccuGCAGCAUGCu -3'
miRNA:   3'- caUGCU---CGGCC----CGUGGG---------CGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 41390 0.71 0.190783
Target:  5'- --cCGAgcGCCGGGCgACCgaggCGCAGCACGa -3'
miRNA:   3'- cauGCU--CGGCCCG-UGG----GCGUCGUGCg -5'
12853 5' -60.9 NC_003387.1 + 37787 0.71 0.195805
Target:  5'- -aGCGcGCCuGGGCgcagcACCCGCggucgcagcAGCGCGCg -3'
miRNA:   3'- caUGCuCGG-CCCG-----UGGGCG---------UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 29391 0.71 0.19939
Target:  5'- -gACGAccucgaucucgcccGCCGGGCGCaggaggaggccgCCGCAGCggcccGCGCg -3'
miRNA:   3'- caUGCU--------------CGGCCCGUG------------GGCGUCG-----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 8401 0.71 0.200943
Target:  5'- cGUGCGGuGUCGGGgccuCgCCGguGCGCGCg -3'
miRNA:   3'- -CAUGCU-CGGCCCgu--G-GGCguCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 45504 0.71 0.200943
Target:  5'- uUGCGucGGCCGGGUcaGCaCCGCGGCcaccauugACGCc -3'
miRNA:   3'- cAUGC--UCGGCCCG--UG-GGCGUCG--------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 50251 0.71 0.206197
Target:  5'- cGUACGucagcGCCGGGCggugcACCUcgGCcuGGCGCGCg -3'
miRNA:   3'- -CAUGCu----CGGCCCG-----UGGG--CG--UCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.